Matn1 (matrilin 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Matn1 (matrilin 1) Heterocephalus glaber
Analyze
Symbol: Matn1
Name: matrilin 1
RGD ID: 18900107
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN chondrocyte differentiation (ortholog); growth plate cartilage chondrocyte morphogenesis (ortholog); regulation of bone mineralization (ortholog); FOUND IN collagen-containing extracellular matrix (inferred); extracellular matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cartilage matrix protein; matrilin 1, cartilage matrix protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,188,140 - 14,195,654 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,188,421 - 14,197,244 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Matn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,188,140 - 14,195,654 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,188,421 - 14,197,244 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MATN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38130,711,277 - 30,723,585 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl130,711,277 - 30,723,585 (-)EnsemblGRCh38hg38GRCh38
GRCh37131,184,124 - 31,196,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36130,958,583 - 30,969,474 (-)NCBINCBI36Build 36hg18NCBI36
Build 34130,855,088 - 30,865,980NCBI
Celera129,439,005 - 29,451,312 (-)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,288,385 - 29,300,751 (-)NCBIHuRef
CHM1_1131,300,553 - 31,312,844 (-)NCBICHM1_1
T2T-CHM13v2.0130,561,248 - 30,573,556 (-)NCBIT2T-CHM13v2.0
Matn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,671,696 - 130,682,787 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,671,696 - 130,682,786 (+)EnsemblGRCm39 Ensembl
GRCm384130,944,385 - 130,955,476 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,944,385 - 130,955,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv374130,500,300 - 130,511,391 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364130,216,500 - 130,227,551 (+)NCBIMGSCv36mm8
Celera4129,108,047 - 129,119,139 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map464.09NCBI
Matn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85148,401,364 - 148,411,256 (+)NCBIGRCr8
mRatBN7.25143,117,198 - 143,127,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5143,117,504 - 143,127,059 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,817,131 - 145,826,698 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,586,948 - 147,596,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,582,484 - 147,592,095 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05149,077,412 - 149,086,957 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5149,077,412 - 149,086,957 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,779,325 - 152,788,646 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,805,644 - 149,815,347 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,815,682 - 149,825,386 (+)NCBI
Celera5141,579,297 - 141,588,738 (+)NCBICelera
Cytogenetic Map5q36NCBI
Matn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,317,716 - 9,325,812 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,317,726 - 9,325,803 (-)NCBIChiLan1.0ChiLan1.0
MATN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21196,117,335 - 196,129,389 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11195,236,219 - 195,246,657 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0129,984,376 - 29,996,430 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,011,638 - 31,021,695 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,011,638 - 31,021,695 (-)Ensemblpanpan1.1panPan2
MATN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1270,225,642 - 70,234,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,801,152 - 66,810,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,785,698 - 70,794,958 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,785,432 - 70,794,948 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,620,527 - 67,629,630 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,619,729 - 68,628,987 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,617,942 - 69,627,015 (+)NCBIUU_Cfam_GSD_1.0
Matn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,260,011 - 48,268,752 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,085,240 - 14,093,334 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,085,240 - 14,093,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MATN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,341,472 - 87,351,501 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,342,030 - 87,351,483 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,047,470 - 81,056,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MATN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120102,115,918 - 102,126,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20102,115,999 - 102,125,811 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603314,521,860 - 14,532,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026171   ⟹   ENSHGLP00000025942
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476414,188,140 - 14,195,654 (-)Ensembl
RefSeq Acc Id: XM_021263418   ⟹   XP_021119077
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,188,421 - 14,197,244 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021119077 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01981 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021119077   ⟸   XM_021263418
- UniProtKB: G5AY71 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025942   ⟸   ENSHGLT00000026171


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018463 Ensembl
Gene3D-CATH 1.20.5.30 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  von Willebrand factor, type A domain UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Matrilin_cc_sf UniProtKB/TrEMBL
  Matrilin_coiled-coil_trimer UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene Matn1 ENTREZGENE
PANTHER CARTILAGE MATRIX PROTEIN UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/TrEMBL
Pfam FXa_inhibition UniProtKB/TrEMBL
  Matrilin_ccoil UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PRINTS VWFADOMAIN UniProtKB/TrEMBL
PROSITE EGF_2 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  Matrilin_ccoil UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP Chicken cartilage matrix protein UniProtKB/TrEMBL
  vWA-like UniProtKB/TrEMBL
UniProt G5AY71 ENTREZGENE, UniProtKB/TrEMBL