Dtd2 (D-aminoacyl-tRNA deacylase 2) - Rat Genome Database

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Gene: Dtd2 (D-aminoacyl-tRNA deacylase 2) Heterocephalus glaber
Analyze
Symbol: Dtd2
Name: D-aminoacyl-tRNA deacylase 2
RGD ID: 18899644
Description: ENCODES a protein that exhibits Ala-tRNA(Thr) hydrolase activity (inferred); D-aminoacyl-tRNA deacylase activity (inferred); D-tyrosyl-tRNA(Tyr) deacylase activity (inferred); INVOLVED IN aminoacyl-tRNA metabolism involved in translational fidelity (inferred); tRNA metabolic process (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: D-tyrosyl-tRNA deacylase 2 (putative); probable D-tyrosyl-tRNA(Tyr) deacylase 2; Putative D-tyrosyl-tRNA(Tyr) deacylase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820859,511 - 868,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624820859,554 - 870,951 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dtd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820859,511 - 868,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624820859,554 - 870,951 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DTD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381431,446,036 - 31,457,506 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1431,446,036 - 31,457,506 (-)EnsemblGRCh38hg38GRCh38
GRCh371431,915,242 - 31,926,712 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,984,993 - 30,996,431 (-)NCBINCBI36Build 36hg18NCBI36
Build 341430,985,947 - 30,996,382NCBI
Celera1411,780,548 - 11,791,986 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1412,032,751 - 12,044,192 (-)NCBIHuRef
CHM1_11431,914,338 - 31,925,783 (-)NCBICHM1_1
T2T-CHM13v2.01425,643,623 - 25,655,096 (-)NCBIT2T-CHM13v2.0
Dtd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,035,089 - 52,053,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,035,095 - 52,053,284 (-)EnsemblGRCm39 Ensembl
GRCm381251,988,306 - 52,006,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,988,312 - 52,006,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv371253,098,494 - 53,107,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361252,919,127 - 52,928,121 (-)NCBIMGSCv36mm8
MGSCv361246,437,199 - 46,446,197 (-)NCBIMGSCv36mm8
Celera1253,303,768 - 53,313,203 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.11NCBI
Dtd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,185,496 - 75,191,774 (-)NCBIGRCr8
mRatBN7.2669,450,146 - 69,456,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,449,614 - 69,456,427 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,875,365 - 69,880,971 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0670,182,004 - 70,187,610 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,621,529 - 69,627,135 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,781,229 - 72,786,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,780,543 - 72,786,830 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0682,343,041 - 82,348,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4672,153,048 - 72,158,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1672,154,945 - 72,161,761 (-)NCBI
Celera668,326,582 - 68,332,188 (-)NCBICelera
Cytogenetic Map6q23NCBI
Dtd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540929,151,779 - 29,160,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540929,151,779 - 29,160,734 (+)NCBIChiLan1.0ChiLan1.0
DTD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,775,279 - 32,786,789 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11431,992,742 - 32,003,297 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,222,744 - 12,234,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11430,419,810 - 30,431,296 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1430,419,810 - 30,431,296 (-)Ensemblpanpan1.1panPan2
DTD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,694,999 - 10,706,155 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,696,505 - 10,706,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,557,501 - 10,568,679 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0810,797,336 - 10,808,515 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,798,842 - 10,808,451 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,479,232 - 10,490,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,555,980 - 10,567,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,841,065 - 10,852,122 (-)NCBIUU_Cfam_GSD_1.0
Dtd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,542,103 - 42,551,302 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364946,047,857 - 6,057,185 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DTD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl768,106,224 - 68,116,986 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1768,105,268 - 68,118,220 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2772,987,051 - 72,997,913 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002659   ⟹   ENSHGLP00000002607
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624820859,511 - 868,653 (+)Ensembl
RefSeq Acc Id: XM_004864029   ⟹   XP_004864086
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624820859,554 - 870,951 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864086 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002607
  ENSHGLP00000035363
  ENSHGLP00100045887
GenBank Protein JAO01148 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004864086   ⟸   XM_004864029
- UniProtKB: G5CAL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002607   ⟸   ENSHGLT00000002659


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001960 Ensembl, ENTREZGENE
  ENSHGLG00000046094 UniProtKB/TrEMBL
  ENSHGLG00100046466 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002659 ENTREZGENE
  ENSHGLT00000087112 UniProtKB/TrEMBL
  ENSHGLT00100060778 UniProtKB/TrEMBL
Gene3D-CATH 3.50.80.10 UniProtKB/TrEMBL
InterPro Daa-tRNA_deacyls_DTD UniProtKB/TrEMBL
  DTD-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101699177 UniProtKB/TrEMBL
NCBI Gene Dtd2 ENTREZGENE
PANTHER D-AMINOACYL-TRNA DEACYLASE 2 UniProtKB/TrEMBL
  PTHR10472 UniProtKB/TrEMBL
Pfam Tyr_Deacylase UniProtKB/TrEMBL
Superfamily-SCOP SSF69500 UniProtKB/TrEMBL
UniProt G5CAL8 ENTREZGENE, UniProtKB/TrEMBL