GLT8D2 (glycosyltransferase 8 domain containing 2) - Rat Genome Database

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Gene: GLT8D2 (glycosyltransferase 8 domain containing 2) Chlorocebus sabaeus
Analyze
Symbol: GLT8D2
Name: glycosyltransferase 8 domain containing 2
RGD ID: 18785370
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); UDP-glycosyltransferase activity (inferred); ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycosyltransferase 8 domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,191,277 - 99,264,533 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,188,883 - 99,250,384 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,789,662 - 145,814,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GLT8D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,191,277 - 99,264,533 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,188,883 - 99,250,384 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,789,662 - 145,814,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GLT8D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812103,988,987 - 104,064,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12103,988,987 - 104,064,183 (-)EnsemblGRCh38hg38GRCh38
GRCh3712104,382,765 - 104,458,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612102,906,895 - 102,968,045 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412102,885,231 - 102,946,382NCBI
Celera12104,046,524 - 104,107,666 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,442,232 - 101,503,286 (-)NCBIHuRef
CHM1_112104,348,682 - 104,409,832 (-)NCBICHM1_1
T2T-CHM13v2.012103,950,706 - 104,026,130 (-)NCBIT2T-CHM13v2.0
Glt8d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,486,262 - 82,529,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,486,267 - 82,526,484 (-)EnsemblGRCm39 Ensembl
GRCm381082,650,431 - 82,694,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,650,433 - 82,690,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,113,178 - 82,153,395 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,080,232 - 82,120,449 (-)NCBIMGSCv36mm8
Celera1084,633,367 - 84,675,128 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Glt8d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,917,055 - 22,968,616 (+)NCBIGRCr8
mRatBN7.2721,029,534 - 21,081,081 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl721,029,525 - 21,081,080 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0727,146,382 - 27,196,689 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,174,882 - 27,192,882 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,294,791 - 27,312,854 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,265,829 - 23,299,748 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera718,210,215 - 18,260,357 (+)NCBICelera
Cytogenetic Map7q13NCBI
Glt8d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,680,807 - 38,708,560 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,680,302 - 38,708,383 (-)NCBIChiLan1.0ChiLan1.0
GLT8D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,053,505 - 112,126,569 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,049,898 - 112,122,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012101,567,144 - 101,640,505 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112104,961,397 - 105,036,590 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12104,961,394 - 105,036,590 (-)Ensemblpanpan1.1panPan2
GLT8D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,514,650 - 42,550,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,493,950 - 42,547,517 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1542,883,064 - 42,920,316 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01543,171,202 - 43,208,508 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1543,174,663 - 43,204,975 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11542,437,301 - 42,474,295 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01542,536,341 - 42,573,581 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01542,807,466 - 42,844,508 (-)NCBIUU_Cfam_GSD_1.0
Glt8d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494517,425,332 - 17,465,956 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649210,435,746 - 10,478,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649210,435,746 - 10,476,400 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLT8D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl580,410,372 - 80,473,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1580,409,915 - 80,473,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,991,394 - 84,048,056 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Glt8d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,673,752 - 4,707,258 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,660,491 - 4,707,092 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 14 57
Below cutoff 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000001073   ⟹   ENSCSAP00000014996
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1199,188,883 - 99,250,384 (-)Ensembl
RefSeq Acc Id: XM_037986125   ⟹   XP_037842053
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037145,789,662 - 145,814,100 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037842053 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014996.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000014996   ⟸   ENSCSAT00000001073
RefSeq Acc Id: XP_037842053   ⟸   XM_037986125
- UniProtKB: A0A0D9S2A7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003046 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001073.1 UniProtKB/TrEMBL
InterPro Glyco_trans_8 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report csab:103238982 UniProtKB/TrEMBL
NCBI Gene GLT8D2 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam Glyco_transf_8 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0D9S2A7 ENTREZGENE, UniProtKB/TrEMBL