LMNB1 (lamin B1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LMNB1 (lamin B1) Chlorocebus sabaeus
Analyze
Symbol: LMNB1
Name: lamin B1
RGD ID: 18759195
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); phospholipase binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to corticosterone stimulus (ortholog); cellular response to L-glutamate (ortholog); cellular response to organic cyclic compound (ortholog); ASSOCIATED WITH adult-onset autosomal dominant demyelinating leukodystrophy (ortholog); Animal Disease Models (ortholog); COVID-19 (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lamin-B1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12329,759,133 - 29,814,332 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2329,759,514 - 29,814,314 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603448,254,893 - 48,313,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LMNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12329,759,133 - 29,814,332 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2329,759,514 - 29,814,314 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603448,254,893 - 48,313,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LMNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385126,776,623 - 126,837,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5126,776,623 - 126,837,020 (+)EnsemblGRCh38hg38GRCh38
GRCh375126,112,315 - 126,172,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365126,140,732 - 126,200,608 (+)NCBINCBI36Build 36hg18NCBI36
Build 345126,140,731 - 126,200,608NCBI
Celera5122,068,688 - 122,128,577 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5121,304,338 - 121,364,498 (+)NCBIHuRef
CHM1_15125,544,889 - 125,605,473 (+)NCBICHM1_1
T2T-CHM13v2.05127,296,579 - 127,357,028 (+)NCBIT2T-CHM13v2.0
Lmnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391856,840,885 - 56,886,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1856,840,885 - 56,886,496 (+)EnsemblGRCm39 Ensembl
GRCm381856,707,813 - 56,753,424 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1856,707,813 - 56,753,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv371856,867,467 - 56,913,078 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361856,833,242 - 56,878,791 (+)NCBIMGSCv36mm8
Celera1858,016,751 - 58,063,869 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1830.84NCBI
Lmnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,373,939 - 52,413,284 (+)NCBIGRCr8
mRatBN7.21850,175,861 - 50,215,210 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,175,874 - 50,214,502 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1852,214,944 - 52,253,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01852,922,869 - 52,961,415 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,720,824 - 50,759,431 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01851,785,111 - 51,822,264 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1851,785,111 - 51,822,264 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01850,979,862 - 51,018,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,470,605 - 52,508,022 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11852,516,112 - 52,553,517 (+)NCBI
Celera1848,320,757 - 48,358,598 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Lmnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555214,583,671 - 4,612,271 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555214,583,691 - 4,612,271 (+)NCBIChiLan1.0ChiLan1.0
LMNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24122,088,569 - 122,150,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15120,228,131 - 120,289,089 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05122,179,513 - 122,240,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15127,949,457 - 128,010,721 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5127,949,457 - 128,010,721 (+)Ensemblpanpan1.1panPan2
LMNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,996,627 - 16,052,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1115,930,436 - 16,052,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1114,788,442 - 14,844,580 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,721,688 - 16,778,072 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1116,721,265 - 16,778,626 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11115,451,725 - 15,508,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,298,132 - 15,354,432 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,895,575 - 15,951,943 (+)NCBIUU_Cfam_GSD_1.0
Lmnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213138,583,486 - 138,637,939 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936504157,453 - 211,967 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936504157,459 - 211,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2129,807,318 - 129,872,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12129,807,228 - 129,862,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,104,017 - 135,158,937 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Lmnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477414,805,465 - 14,863,241 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477414,806,585 - 14,863,543 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 6 16 17
Low 30 4 43
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008014289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000012574   ⟹   ENSCSAP00000010609
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2329,759,514 - 29,814,314 (+)Ensembl
RefSeq Acc Id: XM_008014289   ⟹   XP_008012480
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12329,759,133 - 29,814,332 (+)NCBI
Vero_WHO_p1.0NW_02366603448,254,893 - 48,313,748 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008012480 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010609
  ENSCSAP00000010609.1
RefSeq Acc Id: XP_008012480   ⟸   XM_008014289
- UniProtKB: A0A0D9RPS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010609   ⟸   ENSCSAT00000012574


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014483 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012574.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  2.60.40.1260 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Lamin_tail_dom UniProtKB/TrEMBL
  Lamin_tail_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103244455 UniProtKB/TrEMBL
NCBI Gene LMNB1 ENTREZGENE
PANTHER LAMIN DM0-RELATED UniProtKB/TrEMBL
  LAMIN-B1 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  LTD UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
  LTD UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
  SSF74853 UniProtKB/TrEMBL
UniProt A0A0D9RPS0 ENTREZGENE, UniProtKB/TrEMBL