MRPS23 (mitochondrial ribosomal protein S23)

Gene: MRPS23 (mitochondrial ribosomal protein S23) Chlorocebus sabaeus

Analyze

Symbol:

MRPS23

Name:

mitochondrial ribosomal protein S23

RGD ID:

18755379

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH Breast Neoplasms (ortholog); combined oxidative phosphorylation deficiency 46 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (inferred); nuclear membrane (inferred); ribosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

28S ribosomal protein S23, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,550,023 - 35,560,259 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	6,367,576 - 6,378,204 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

combined oxidative phosphorylation deficiency 46 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Joubert syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

mitochondrion (IEA)

nuclear membrane (IEA)

ribosome (IEA)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

MRPS23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,550,023 - 35,560,259 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	6,367,576 - 6,378,204 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

MRPS23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	57,834,781 - 57,850,044 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	57,834,781 - 57,850,056 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	55,912,142 - 55,927,405 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	53,271,841 - 53,282,398 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	53,271,840 - 53,282,398	NCBI
Celera	17	52,378,620 - 52,389,180 (-)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,276,865 - 51,287,941 (-)	NCBI		HuRef
CHM1_1	17	55,981,294 - 55,992,442 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	58,708,009 - 58,723,292 (-)	NCBI		T2T-CHM13v2.0

Mrps23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	88,084,932 - 88,102,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	88,095,214 - 88,102,333 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	88,194,106 - 88,211,507 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	88,204,388 - 88,211,507 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	88,017,920 - 88,025,009 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	88,020,613 - 88,027,702 (+)	NCBI		MGSCv36	mm8
Celera	11	97,808,023 - 97,815,117 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.4	NCBI

Mrps23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,494,417 - 73,503,996 (+)	NCBI		GRCr8
mRatBN7.2	10	72,999,033 - 73,006,791 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,998,497 - 73,006,264 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	77,608,695 - 77,616,490 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	77,113,626 - 77,121,421 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	72,578,144 - 72,585,940 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	75,527,265 - 75,536,767 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,529,009 - 75,536,767 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	74,569,618 - 74,577,376 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	76,500,621 - 76,508,379 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	76,503,245 - 76,522,225 (+)	NCBI
Celera	10	71,908,402 - 71,916,160 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Mrps23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	5,134,865 - 5,143,036 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	5,134,865 - 5,143,872 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPS23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	74,013,814 - 74,025,510 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	78,824,707 - 78,836,377 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	51,917,574 - 51,929,577 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	56,775,846 - 56,787,058 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	56,775,846 - 56,787,058 (-)	Ensembl	panpan1.1		panPan2

MRPS23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,546,697 - 32,553,116 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	32,546,498 - 32,553,042 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	31,785,398 - 31,791,827 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	33,354,934 - 33,361,448 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	33,354,937 - 33,361,371 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,139,492 - 32,145,973 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	32,422,743 - 32,429,230 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	32,506,391 - 32,512,823 (-)	NCBI		UU_Cfam_GSD_1.0

Mrps23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	31,872,313 - 31,879,525 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	5,195,418 - 5,201,296 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	5,195,525 - 5,202,737 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,122,020 - 34,129,548 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,123,679 - 34,129,574 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	35,178,307 - 35,184,213 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Mrps23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	12,727,261 - 12,736,042 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	12,727,524 - 12,733,542 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008011341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008011341 ⟹ XP_008009532

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	35,550,023 - 35,560,259 (+)	NCBI
Vero_WHO_p1.0	NW_023666077	6,367,576 - 6,378,204 (+)	NCBI

Sequence:

show sequence

TATCTGAAGCAGCCGCTTCCGGTTCCGGTAGCAGCTAGTCACGCTTGATCCCAGGCGCAGATCA
TGGCAGGCAGCCGGCTGGAAACCGTAGGGAGCGTCTTCTCGCGGACTCGGAACCTGATTCGGGC
CGGGGTGCTGAAGGAGAAACCTCTGTGGTTGGACGTATATAACGCCTTTCCCCCGCTGAGGGAG
CCCGTCTTCCAAAGAACCCGATTGCGATATGGCAAAGCCAAAGCTTCCATCCAGGACATCTGGT
ACCACGAGGATCAGATTAGAGCGAAGTTTTATTCAGTGTATGGGTCTGGTCAAAGAGCTTTTGA
TCTGTTCAATCTAAACTTCAAGTCTACCTGTCAACGGTTTGTGGAGAAGTACACTGAGCTGCAG
AAACTTGGAGAAACAGATGAAGAGAAGTTATTTGTGGAAACAGGGAAGGCTTTATTGGCAGAAG
GTGTCATTTTAAGACGAGTTGGCGAAGTAAGGACTCAACATGAAGGTAGTCACGATTCCTGGAA
ATTCGAACACTTGAGTGTCAGACCACAGACTGCGGTGGAAGAGAACGAGACTCAGAAAGAAGTT
CCACAGGACCAGCATTTGGAGGCACCTGCAGACCAGTCGAAAGGTCTCTCGCCTCCCTGAAGGA
CCTGTATACCGTGTATGCTGGCATTCAGGCTACTCACTGGCTGAATGTTGAGCTATTTTTAAAC
AGTTGAACTGTGTAAATGTTTCCTGATCTCTAAGGTATTATGTTTGCCTTCTCTTAGTTATTTC
TGGGTTGTCATAAAGCTCGGTATCATGGTTTGACAGAAGCAGTTATGCGAACTTTTATGTTAGG
ACATTACTAAATAAAGAATTCCCTAGCTGCTTATAAAGTAAATTTACTTTGAATTGTAAATAAC
ATGAAGAAACCTTTATAAAGATTGTTCAAATGGGACTCAGTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_008009532	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001946.1

RefSeq Acc Id:	XP_008009532 ⟸ XM_008011341
- UniProtKB:	A0A0D9R007 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005635	UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003671.1	UniProtKB/TrEMBL
InterPro	Ribosomal_S23	UniProtKB/TrEMBL
	Ribosomal_S23_mit_dom	UniProtKB/TrEMBL
NCBI Gene	MRPS23	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S23, MITOCHONDRIAL	UniProtKB/TrEMBL
	MITOCHONDRIAL RIBOSOMAL PROTEIN S23	UniProtKB/TrEMBL
Pfam	MRP-S23	UniProtKB/TrEMBL
UniProt	A0A0D9R007	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM