PRAP1 (proline rich acidic protein 1)

Gene: PRAP1 (proline rich acidic protein 1) Chlorocebus sabaeus

Analyze

Symbol:

PRAP1

Name:

proline rich acidic protein 1

RGD ID:

18746878

Description:

ENCODES a protein that exhibits triglyceride binding (ortholog); INVOLVED IN cellular response to X-ray (ortholog); deactivation of mitotic spindle assembly checkpoint (ortholog); DNA damage response (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline-rich acidic protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	53,195,600 - 53,201,846 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	41,331,491 - 41,337,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

distal 10q deletion syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to X-ray (ISO)

deactivation of mitotic spindle assembly checkpoint (ISO)

DNA damage response (ISO)

DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (ISO)

negative regulation of apoptotic process (ISO)

positive regulation of intestinal lipid absorption (ISO)

positive regulation of phospholipid transport (ISO)

positive regulation of triglyceride transport (ISO)

Cellular Component

endoplasmic reticulum (ISO)

extracellular region (ISO)

Molecular Function

protein binding (ISO)

triglyceride binding (ISO)

References

Genomics

Comparative Map Data

PRAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	53,195,600 - 53,201,846 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	41,331,491 - 41,337,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PRAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	133,347,373 - 133,352,683 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	133,347,368 - 133,352,683 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	135,160,877 - 135,166,187 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	135,010,901 - 135,016,177 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	135,049,791 - 135,055,068	NCBI
Celera	10	128,351,341 - 128,356,680 (-)	NCBI		Celera
Cytogenetic Map	10	q26.3	NCBI
HuRef	10	128,704,994 - 128,710,302 (+)	NCBI		HuRef
CHM1_1	10	135,442,819 - 135,448,127 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	134,302,524 - 134,307,799 (+)	NCBI		T2T-CHM13v2.0

Prap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	139,673,309 - 139,677,116 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	139,673,308 - 139,677,113 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	140,093,396 - 140,097,203 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	140,093,395 - 140,097,200 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	147,279,295 - 147,283,102 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	139,944,718 - 139,948,517 (+)	NCBI		MGSCv36	mm8
Celera	7	139,891,394 - 139,895,266 (+)	NCBI		Celera
Cytogenetic Map	7	F4	NCBI
cM Map	7	85.1	NCBI

Prap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	204,312,723 - 204,316,519 (+)	NCBI		GRCr8
mRatBN7.2	1	194,883,078 - 194,886,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	194,883,078 - 194,886,872 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	203,243,943 - 203,247,739 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	210,378,980 - 210,382,776 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	203,052,811 - 203,056,607 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	212,558,257 - 212,562,053 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	212,558,257 - 212,562,051 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	219,472,906 - 219,476,702 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	199,889,629 - 199,893,425 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	200,039,620 - 200,043,415 (+)	NCBI
Celera	1	192,560,142 - 192,563,938 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Prap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	10,999,168 - 11,002,651 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	10,982,530 - 11,002,747 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	145,455,122 - 145,481,157 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	145,460,479 - 145,486,514 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	10	134,248,728 - 134,268,442 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	134,248,728 - 134,268,442 (+)	Ensembl	panpan1.1		panPan2

PRAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	40,927,744 - 40,931,355 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	40,982,768 - 40,986,442 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	41,562,642 - 41,566,316 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	28	41,046,731 - 41,050,405 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	41,036,325 - 41,039,999 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	41,439,226 - 41,442,900 (+)	NCBI		UU_Cfam_GSD_1.0

Prap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	6,080,911 - 6,090,531 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	19,477,453 - 19,480,297 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	19,477,278 - 19,480,387 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	141,325,965 - 141,329,955 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	153,794,810 - 153,798,712 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Prap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	13,343,674 - 13,351,284 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	13,346,621 - 13,350,428 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008017246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008017247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008017248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008017247 ⟹ XP_008015438

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	26	53,195,600 - 53,201,846 (+)	NCBI
Vero_WHO_p1.0	NW_023666054	41,331,491 - 41,337,643 (+)	NCBI

Sequence:

show sequence

TAGTAAAGATCCTTGCCGCTTGGCTTTGACTCTGGACTCTGGTGGTCTTCTTTGGGGAACAAAC
GGTCTGGGTATAACAGAGCCACCACGCCCGGCCACTAAACAGGTTTTTAAAGGCAAACTTCTTC
CTCAGTCAGGTGTGGCAGGCCCTGAGGGGGCAGCTGGGTGTCCCCACTGAGATCTAGGCCCGAG
TGGGCTGGGCGGCTGCAGAGCCAGTCACCTGGGCTGTGCAGGATGGGATCCCTGACTCCGACCT
CTGTCCTGCCACGCCCCAAGTGGCAGCAATAAAGCCCCAAGAAGCCTGGGCCTGGGCAGGAGGA
GCTGGGCCGGGTGCCAGATACTGGGATCAGCCACTGCAGCTCCCTGAGCACTCTCTCCACAGAC
GGGGACCCAGACATGAGGAGGGTCCTCATGGTTACCAGCCTGGTGGCTGTGCTGCTGTGGGAGG
CAGGTGCGCCCTCAGCACCCAAGGTCCAAGTCAAACACCGGCCCTCAGAGCAGGAGGCAGAGAA
GGCCTGGGGCGCCCGCGTGGTGGAGCCTCCAGAGAAGGACGACCAGCTGGTGGGGCTGCTCCCT
GTCCCGAAGCCGAAGCTCTTGACCGCTGAGAAGTCACCAGGTCAGGGCAGGTGCCCCGTCCTTC
CAGGCCTCGAGGCCTGGGTGGAGACTGAGGACATCCTGGGCCATGTCCTAAGCCCCCAGCAGGG
TCCTGAGCCCGACCATGACAGCCTGCACCACCCTCCGCCCGAGGAGGACCAGGGCGAGGAGGGG
CCTCAGTTGTGGGTGATGCCAAATCGCCAGGTGCTCCGGGGACCGGAGGAAGACCAAGACCACA
TCTACCACCCCCAGTAGGGCTCCAGGGGCCACCACTGCCCCTCCCTGTCCCACAGCCCAGGCTG
TTGGGACTGGAACCCTTCCTACCCTCCCCCTGCCAGAGGTAGGCAAATAAACCCCAGCAGGCCG
GGCGAGGTGGCTCATGCCTGTAATCCCAGCACTCTTGGAGGCTGAGGCGGGCGGATCACCTGAA

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Protein Sequences


Protein RefSeqs	XP_008015438	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000002927.1

RefSeq Acc Id:	XP_008015438 ⟸ XM_008017247
- UniProtKB:	A0A0D9R2T8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000006642	UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000004681.1	UniProtKB/TrEMBL
InterPro	PRAP	UniProtKB/TrEMBL
NCBI Gene	PRAP1	ENTREZGENE
PANTHER	PROLINE-RICH ACIDIC PROTEIN 1	UniProtKB/TrEMBL
	PROLINE-RICH ACIDIC PROTEIN 1	UniProtKB/TrEMBL
Pfam	PRAP	UniProtKB/TrEMBL
UniProt	A0A0D9R2T8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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