CDCA5 (cell division cycle associated 5)

Gene: CDCA5 (cell division cycle associated 5) Chlorocebus sabaeus

Analyze

Symbol:

CDCA5

Name:

cell division cycle associated 5

RGD ID:

18737475

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitotic cell cycle (ortholog); mitotic chromosome condensation (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); COVID-19 (ortholog); glycogen storage disease V (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sororin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	9,151,503 - 9,157,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	9,151,712 - 9,157,456 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	106,533,173 - 106,538,620 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

COVID-19 (ISO)

glycogen storage disease V (ISO)

hepatocellular carcinoma (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

double-strand break repair (IEA)

mitotic cell cycle (ISO)

mitotic chromosome condensation (ISO)

mitotic metaphase chromosome alignment (IEA)

mitotic sister chromatid cohesion (IEA)

positive regulation of exit from mitosis (IEA)

Cellular Component

chromatin (ISO)

chromosome (IEA)

cytoplasm (ISO)

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

Genomics

Comparative Map Data

CDCA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	9,151,503 - 9,157,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	9,151,712 - 9,157,456 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	106,533,173 - 106,538,620 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CDCA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,061,093 - 65,084,040 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,066,300 - 65,084,164 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	64,844,925 - 64,851,512 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	64,601,503 - 64,608,100 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	64,601,502 - 64,608,100	NCBI
Celera	11	62,171,226 - 62,177,913 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,171,560 - 61,178,247 (-)	NCBI		HuRef
CHM1_1	11	64,728,627 - 64,735,313 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,054,375 - 65,077,318 (-)	NCBI		T2T-CHM13v2.0

Cdca5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	6,135,127 - 6,141,803 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	6,135,013 - 6,141,807 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	6,085,097 - 6,091,773 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	6,084,983 - 6,091,777 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	6,085,097 - 6,091,773 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	6,085,097 - 6,091,773 (+)	NCBI		MGSCv36	mm8
Celera	19	5,957,560 - 5,964,236 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Cdca5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,807,863 - 212,821,313 (+)	NCBI		GRCr8
mRatBN7.2	1	203,378,550 - 203,392,027 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,378,577 - 203,392,023 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,731,627 - 211,745,181 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,823,942 - 218,837,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,515,011 - 211,528,461 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,448,661 - 221,462,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,448,661 - 221,462,233 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,384,097 - 228,394,997 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	210,247,351 - 210,247,881 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	200,912,264 - 200,925,714 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Cdca5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955422	20,114,565 - 20,129,679 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDCA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	52,115,081 - 52,129,223 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	52,115,203 - 52,120,817 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,723,160 - 50,736,970 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	53,156,720 - 53,170,506 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	52,251,940 - 52,258,937 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,825,978 - 51,839,752 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,620,789 - 52,634,766 (+)	NCBI		UU_Cfam_GSD_1.0

Cdca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,842,550 - 7,856,508 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	4,284,958 - 4,291,874 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	4,285,007 - 4,291,875 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDCA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	7,103,673 - 7,113,202 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	7,103,648 - 7,112,772 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	6,235,704 - 6,251,945 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cdca5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624767	21,321,286 - 21,327,780 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	31	17	50
Below cutoff	5	3	10

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007990512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000005651 ⟹ ENSCSAP00000003868

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	9,151,712 - 9,157,456 (+)	Ensembl

RefSeq Acc Id:

XM_007990512 ⟹ XP_007988703

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	9,151,503 - 9,157,412 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	106,533,173 - 106,538,620 (+)	NCBI

Sequence:

show sequence

CGGGTAATTCGAAAGTCTTTTGCAGCGAGTGGCCTTCCCCGTTGGCGCGCGCCCGGGGCGGCGG
CGCTGGAGGAGCTCAAGACCGAGCTTAGTTATGTCTGGGAGGCGAACGCGGTCTGGAGGAGCCG
CTCAGCGCTCCGGGCCAAGGGCCCCATCTCCTACTAAGCCTCTGCGGAGGTCCCAGCGGAAATC
AGGCTCTGAACTCCCGAGCATCCTCCCTGAAATCTGGCCGAAGACACCCAGTGCGGCTGCAATC
AGAAAGCCCATCGTTTTAAAGAGGATCGTGGCCCATGCTGTAGAGGTCCCAGCTGTCCAGTCAC
CTCGCAGGAGCCCTAGGATTGCCTTTCTCTTGGAGAAAGAAAACGAGCCCCCTGGCAGGGAGCT
TACTAAAGAGGACCTTTTCAAGACACACAGCATCCCTGCCACCCCCACCACCACTCCTGTGCCC
AACCCTGATGCCGAGTCCAGCTCCACGGAAGGAGAGCTGGACGCCAGAGACTTGGAAATGTCTA
AGAAAGTCAGGCGTTCCTACAGCCGGCTGGAGACCCTGGGCTCTGCCTCCACCTCCACCCCAGG
CCGCCGGTCCTGCTTTGGCTTCGAGGGGCTGCTGGGGGCAGAAGACTTGTCCGGAGTCTCACCA
GTGGTGTGCTCCAAATTCACTGAGGTCCCCAGAGTCTGTGCAAAGCCCTGGGCCCCAGACATGA
CTCTCCCTGGAATCTCCCCACCACCCGAGAAACAGAAACGTAAGAAGAAGAAGATGCCAGAGAT
CTTGAAAACAGAGCTGGATGAGTGGGCGGCGGCCATGAACGCGGAGTTTGAAGCTGCTGAGCAG
TTTGATCTCCTGGTTGAATGAGATGCAGTGGGGGGTGCACCTGGCCAGACTCTCCCTCCTGTCC
TGTACATAGCCCCCTCCTTGTGGAGGGGACACTTAGGGTCCCCTCCCCTGGTCTTGTTACCTGT
GTGTGTGCTGGTGCTGCGCATGAAGCCTGTCTGCCTTTGAGGGCTTAGGCAGCAGTGGCAGCCA
TCTTGGTTTTAGGAAATGGGGCCGCCTGGCCCAGCCACTCACTGGTGTCCTGTCTCTTGTCGTC
CTGTCCTTCCTATCTCTCCAAAGTACCACAGTCAGTTTCCAGATGGGCCACAGACTGGGGAGGA
GAATCACTGGCCCAGCCAGAAGTTAAAGGGCTGAGGCTTGAGGTGAGGGGCACCCTCTGCTCTT
GCCAGGAAGGGTGGCTCCTTGGAAATAGGCCCAGGGGTTCTGCCAGCCTCGGCCTTTCCATCCT
GAGCTGCCTTCTGTTGGTGGCTTTCTTCCTGAACTCATCTGCCTAAAGAAGTTTTCGGTTCCGT
GGGTTTTCCTTCCAATTCTGTAAATAGTCCCAGAGAGAATTCGTGGGCTGAGGGCAATTCTATC
TTGGAGGAAGAAGCTGGACATTCAGCCTGTGAAGTCTGAGTTTTGAAGGATGTGGGAAGCCTTA
GTTGGGTCTCAGACCATAAGTGTGTACTACACAGAAGCTGTGTTTTCTTTTTTTTTTTTTTTTT
TTTTTTTTTTGAGACGGAGTCTTGC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007988703	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000003868
	ENSCSAP00000003868.1

RefSeq Acc Id:	XP_007988703 ⟸ XM_007990512
- UniProtKB:	A0A0D9R5H9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000003868 ⟸ ENSCSAT00000005651

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000007601	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000005651.1	UniProtKB/TrEMBL
InterPro	Sororin	UniProtKB/TrEMBL
NCBI Gene	CDCA5	ENTREZGENE
PANTHER	PTHR31092	UniProtKB/TrEMBL
	SORORIN	UniProtKB/TrEMBL
Pfam	Sororin	UniProtKB/TrEMBL
UniProt	A0A0D9R5H9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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