TIMM13 (translocase of inner mitochondrial membrane 13)

Gene: TIMM13 (translocase of inner mitochondrial membrane 13) Chlorocebus sabaeus

Analyze

Symbol:

TIMM13

Name:

translocase of inner mitochondrial membrane 13

RGD ID:

18732192

Description:

INVOLVED IN protein transport (inferred); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN fibrillar center (ortholog); mitochondrial intermembrane space protein transporter complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

mitochondrial import inner membrane translocase subunit Tim13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	2,204,751 - 2,207,044 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	2,206,089 - 2,206,673 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	6,453,025 - 6,455,316 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

progressive myoclonus epilepsy 9 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein transport (IEA)

Cellular Component

fibrillar center (ISO)

mitochondrial inner membrane (IEA)

mitochondrial intermembrane space protein transporter complex (ISO)

mitochondrion (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

beta-barrel pathway of mitochondrial protein import (ISO)

References

Genomics

Comparative Map Data

TIMM13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	2,204,751 - 2,207,044 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	2,206,089 - 2,206,673 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	6,453,025 - 6,455,316 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TIMM13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	2,425,625 - 2,427,586 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	2,425,625 - 2,427,586 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	2,425,623 - 2,427,584 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	2,376,622 - 2,378,875 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	2,376,621 - 2,378,875	NCBI
Celera	19	2,363,114 - 2,365,366 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	2,197,673 - 2,199,965 (-)	NCBI		HuRef
CHM1_1	19	2,425,121 - 2,427,413 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	2,401,416 - 2,403,377 (-)	NCBI		T2T-CHM13v2.0

Timm13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,735,284 - 80,736,803 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,735,284 - 80,736,803 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	80,899,450 - 80,900,969 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,899,450 - 80,900,969 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,362,195 - 80,363,714 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,302,579 - 80,303,895 (-)	NCBI		MGSCv36	mm8
Celera	10	81,918,271 - 81,919,790 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Timm13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,459,490 - 9,460,849 (+)	NCBI		GRCr8
mRatBN7.2	7	8,809,069 - 8,810,172 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,809,058 - 8,809,910 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,692,982 - 11,694,085 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,568,490 - 13,569,593 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,435,013 - 11,436,116 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,677,340 - 11,678,443 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,677,340 - 11,678,442 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,844,860 - 11,845,963 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,319,959 - 10,321,062 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	6,993,416 - 6,994,519 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

Timm13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955495	5,781,024 - 5,782,300 (+)	NCBI	ChiLan1.0	ChiLan1.0

TIMM13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	6,810,701 - 6,813,072 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	6,039,965 - 6,042,251 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	1,438,221 - 1,440,190 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	2,404,688 - 2,406,207 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	2,404,691 - 2,406,207 (-)	Ensembl	panpan1.1		panPan2

TIMM13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	20	56,461,360 - 56,462,270 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	57,398,720 - 57,399,648 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	57,376,730 - 57,399,644 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	56,450,957 - 56,451,867 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	56,936,154 - 56,937,077 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	57,136,403 - 57,137,321 (+)	NCBI		UU_Cfam_GSD_1.0

Timm13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	216,388,559 - 216,389,574 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,445,214 - 1,446,239 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,445,209 - 1,446,223 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TIMM13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	76,146,867 - 76,155,729 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	76,146,946 - 76,148,163 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	76,698,404 - 76,699,633 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Timm13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	6,529,727 - 6,530,916 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	6,529,710 - 6,530,910 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	18	60
Low		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007994677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007994678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000009660 ⟹ ENSCSAP00000007770

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	6	2,206,089 - 2,206,673 (-)	Ensembl

RefSeq Acc Id:

XM_007994678 ⟹ XP_007992869

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	2,204,751 - 2,207,044 (-)	NCBI
Vero_WHO_p1.0	NW_023666081	6,453,025 - 6,455,316 (+)	NCBI

Sequence:

show sequence

ACGCGCCGGCTGCCTCGTGCGCATGCGCGGCAGGCCTCTGGTAGGACGAGCCGGAGACAGAGCC
TGTGTACAAAGTGATCGGCTTCGGCCGCACGCAGTGGCCCCCCCACTCCTCGGGCGAAGTCGGC
CGCCTTCCCGCAGAGTCGCAACCACGGGTGGCTTTTGTAGGTAACGGCAGGTCCAGGCCTGCGC
GTGAGCAGAGGGCCCCCCGCGCGACCTGGAATGGCCCGGGCGCGCGCGGTCTTGTGGGGGTTGT
AGTCTTCCGTCCCCGCCCACGTGGACTCCGTTTCCCGTGGTGCCCCGGGCGGCCCGCTTCCGGC
GCAGCTACGGGTCGGCGCACGCGGCCTCGGTCCGGTTGACTTTGCGTAGCCATGGAGGGCGGCT
TCGGCTCCGATTTCGGGGGCTCCAGCAGCGGAAAGCTGGACCCAGGGCTCATAATGGAGCAGGT
GAAGGTGCAGATCGCCGTGGCCAACGCGCAGGAGCTGCTGCAGAGGATGACGGACAAGTGTTTC
CGGAAGTGTATCGGGAAACCTGGGGGCTCCCTGGACAACTCCGAGCAGAAGTGCATCGCCATGT
GCATGGACCGCTACATGGACGCCTGGAACACCGTGTCCCGCGCCTACAACTCGCGGCTGCAGCG
GGAACGAGCCAATATGTGACGGGCGAGGCCACGGGCCGCCCCGCCCCGTTCATTTCCATAAACG
TGCTCTGAAAGGTGGGGCCCGCATGTGCGTACTGCCTGCCCGGGGCTTAGCGGGGTGGCACCGG
TGCTGGGACAGACGGGACTGTGTCCTCGCCACCCCCCGCCTTGCCCCCTGCCAGCCAGTGCAGC
TTGGATCTCGGGGGTGGGGGGCCCCTGTGCCTTCCCAAAGTGCTGGCAGCCCAGTGGCACCTCC
TTCAGGCCTTTGGGGTCTTCCCCTAGTGGGCCCAGGTCAGCCTCATATTTTCTGGGCGGAGAAC
TCTTGTCTGGACTTTGGAGGTGGGGGTGGTCAGACCCCACCGGAGCTGTCACCTCCTGCGGATG
GGCAAATAAATTGGAGGGCGGAGAGAAACCTCTTTATTTCCCTCCTGAGGGATCTCTGGGAAGA
GTTGACGCGTGTCCCTGGAACCCCAGTTCGGAGGGTCTCAGCCTCTCTTGGGTTGGGAGAAGTC
CATCTTTCCCCTTAAGTGCCACCGGGCTGCTGAGTCACGAGGAATGTGTTGTTGCCACCACCCC
TGCCCCAAAGGTTAAGGGGGACAGCCCTCCCCTTATCCAGGCTTGCTTTGACCCCTCTTCCTTC
CACCCGGGTCCTGTTGGAGTGCCAGGCAGGTGGTCCGCGCTGTGACACTGAGGTGCTGAGCCAG
TGAGCTGGGGTGGAGCAGCTGTGTTTATTGGAACAAAGGGTGCTACCAAAATGCATCCCCATGA
CCTATAGCCCCCCCACACCCCCCCACTCCCGTCCTTGAGTAGGGTACAGTGAGGTGGGGTGTTG
GGTGGCCTGCTGCTCCTGCTGCTTTTGCCTAGAGTCCCGGCCTGGGCAGTCACGTGGCGGTCAC
TCCTGGATGTGCTGTCCTATCCAGCCTCTCACAGCTGCCACCCGGGTATAGACACCTGGGAAGT
GGGGCCGGCCGCAGCCATAGCCCCAGCTGGTGACCCCAGTTAGCACCCATCGTCCAGACGGCTC
CCTGCAGGCCAGGGGTCCCCCAGCGTCACCCTGTTGGGGAGAGAAGCGGGGGTTCAGAGTCCGG
TACCTCTCCTATAGCAGCCCTTGGGTCATTGGCCCCCGTAGGGGTGACCGTAGTGAGTGGCTTC
CCTTGGAAGCTGCACTTTCACTATCTGGAAAATGGGCTCAATGCAAAGGTGGCAGACACTGATG
GACACCCGCCACGTGGTCTCGGAGTGGAATGGGGCCTCCCGCTGCAGCCTGTGCCTGCTCTGCC
GTTGAGGCCCAGGGGTGGGATGCGGTGGGTACCCAATAAACGGTTGTGGAGTGGAAATTCCTCC
AGAGCCAAAAAGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_007992869	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000007770
	ENSCSAP00000007770.1

RefSeq Acc Id:	XP_007992869 ⟸ XM_007994678
- UniProtKB:	A0A0D9RGN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000007770 ⟸ ENSCSAT00000009660

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000011577	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000009660.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.810	UniProtKB/TrEMBL
InterPro	Tim10-like	UniProtKB/TrEMBL
	Tim10-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	TIMM13	ENTREZGENE
Pfam	zf-Tim10_DDP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF144122	UniProtKB/TrEMBL
UniProt	A0A0D9RGN1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations