VMO1 (vitelline membrane outer layer 1 homolog) - Rat Genome Database

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Gene: VMO1 (vitelline membrane outer layer 1 homolog) Chlorocebus sabaeus
Analyze
Symbol: VMO1
Name: vitelline membrane outer layer 1 homolog
RGD ID: 18726047
Description: ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vitelline membrane outer layer protein 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,261,009 - 4,262,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,261,012 - 4,262,168 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,375,316 - 17,376,551 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
VMO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,261,009 - 4,262,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,261,012 - 4,262,168 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,375,316 - 17,376,551 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
VMO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,785,285 - 4,786,364 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,785,285 - 4,786,433 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,688,580 - 4,689,659 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,635,320 - 4,636,473 (-)NCBINCBI36Build 36hg18NCBI36
Celera174,703,786 - 4,704,935 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,576,831 - 4,577,979 (-)NCBIHuRef
CHM1_1174,697,335 - 4,698,484 (-)NCBICHM1_1
T2T-CHM13v2.0174,674,933 - 4,676,011 (-)NCBIT2T-CHM13v2.0
Vmo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,404,342 - 70,405,442 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,404,342 - 70,405,442 (-)EnsemblGRCm39 Ensembl
GRCm381170,513,516 - 70,514,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,513,516 - 70,514,616 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,327,018 - 70,328,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,329,711 - 70,330,811 (-)NCBIMGSCv36mm8
Celera1178,060,811 - 78,061,911 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Vmo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,726,572 - 55,733,432 (-)NCBIGRCr8
mRatBN7.21055,227,944 - 55,234,794 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,227,944 - 55,229,289 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,908,008 - 59,909,093 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,396,513 - 59,397,598 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,895,604 - 54,896,689 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,120,499 - 57,121,584 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,120,499 - 57,121,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,878,079 - 56,879,800 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,358,237 - 57,359,322 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1054,374,322 - 54,375,407 (-)NCBICelera
Cytogenetic Map10q24NCBI
Vmo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,192,328 - 10,210,548 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,197,185 - 10,210,472 (-)NCBIChiLan1.0ChiLan1.0
VMO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,394,068 - 12,397,491 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,362,413 - 14,363,615 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,832,104 - 4,834,669 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,821,474 - 4,822,623 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,821,474 - 4,822,623 (-)Ensemblpanpan1.1panPan2
VMO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,784,284 - 31,788,841 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,786,057 - 31,787,068 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,923,083 - 31,929,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,888,376 - 31,895,441 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,891,048 - 31,892,059 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,854,768 - 31,861,842 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,814,432 - 31,821,506 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,991,091 - 31,997,708 (+)NCBIUU_Cfam_GSD_1.0
Vmo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560252,996,596 - 53,005,009 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,900,666 - 2,904,463 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,903,520 - 2,904,458 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VMO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,104,400 - 52,109,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,108,973 - 52,109,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,329,874 - 54,330,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Vmo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,666,894 - 8,667,871 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,666,894 - 8,667,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 24 19 23
Low 12 1 37
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008009951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000011141   ⟹   ENSCSAP00000009224
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl164,261,012 - 4,262,168 (-)Ensembl
RefSeq Acc Id: XM_008009951   ⟹   XP_008008142
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1164,261,009 - 4,262,174 (-)NCBI
Vero_WHO_p1.0NW_02366605917,375,316 - 17,376,551 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008008142 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009224
  ENSCSAP00000009224.1
Reference Protein Sequences
RefSeq Acc Id: XP_008008142   ⟸   XM_008009951
- UniProtKB: A0A0D9RKT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000009224   ⟸   ENSCSAT00000011141


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013044 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011141.1 UniProtKB/TrEMBL
Gene3D-CATH 2.100.10.20 UniProtKB/TrEMBL
InterPro VOMI UniProtKB/TrEMBL
  VOMI_sf UniProtKB/TrEMBL
KEGG Report csab:103242200 UniProtKB/TrEMBL
NCBI Gene VMO1 ENTREZGENE
PANTHER PTHR18841 UniProtKB/TrEMBL
  VITELLINE MEMBRANE OUTER LAYER PROTEIN 1 HOMOLOG UniProtKB/TrEMBL
Pfam VOMI UniProtKB/TrEMBL
Superfamily-SCOP SSF51092 UniProtKB/TrEMBL
UniProt A0A0D9RKT5 ENTREZGENE, UniProtKB/TrEMBL