CST9L (cystatin 9 like) - Rat Genome Database

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Gene: CST9L (cystatin 9 like) Chlorocebus sabaeus
Analyze
Symbol: CST9L
Name: cystatin 9 like
RGD ID: 18692123
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); INVOLVED IN antimicrobial humoral response (inferred); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cystatin-9-like; LOC103215502; putative cystatin-9-like protein CST9LP1
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,972,068 - 52,977,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605092,863,399 - 92,866,371 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CST9L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,972,068 - 52,977,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605092,863,399 - 92,866,371 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CST9L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,564,732 - 23,568,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,564,732 - 23,568,484 (-)EnsemblGRCh38hg38GRCh38
GRCh372023,545,369 - 23,549,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,493,369 - 23,497,329 (-)NCBINCBI36Build 36hg18NCBI36
Celera2023,618,635 - 23,622,652 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,506,670 - 23,510,688 (-)NCBIHuRef
CHM1_12023,545,153 - 23,549,170 (-)NCBICHM1_1
T2T-CHM13v2.02023,624,266 - 23,628,019 (-)NCBIT2T-CHM13v2.0
Cst9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,677,067 - 148,680,657 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,677,067 - 148,680,658 (+)EnsemblGRCm39 Ensembl
GRCm382148,835,147 - 148,838,737 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,835,147 - 148,838,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv372148,660,883 - 148,664,473 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362148,526,588 - 148,530,178 (+)NCBIMGSCv36mm8
Celera2150,098,314 - 150,104,986 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.58NCBI
Cst9l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,741,232 - 156,744,045 (+)NCBIGRCr8
mRatBN7.23136,288,093 - 136,290,906 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3136,288,093 - 136,290,906 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3140,240,024 - 140,242,835 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,824,174 - 148,826,985 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,513,723 - 146,516,536 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03143,172,691 - 143,175,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3143,172,686 - 143,175,500 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,581,044 - 149,583,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,601,785 - 137,604,598 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13137,507,294 - 137,510,171 (+)NCBI
Celera3135,129,456 - 135,132,269 (+)NCBICelera
Cytogenetic Map3q41NCBI
LOC485559
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1231,913 - 5,329 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2333,977 - 39,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.023245,047 - 250,664 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.123103,818 - 109,435 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.023186,015 - 191,632 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.023175,050 - 180,667 (-)NCBIUU_Cfam_GSD_1.0
LOC100516302
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,451,597 - 30,454,777 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,451,710 - 30,454,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,540,856 - 34,543,898 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system
High
Medium
Low 14
Below cutoff 2 4

Sequence


Reference Sequences
RefSeq Acc Id: XM_007961969   ⟹   XP_007960160
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1252,972,068 - 52,977,192 (+)NCBI
Vero_WHO_p1.0NW_02366605092,863,399 - 92,866,371 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007960160 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007219
  ENSCSAP00000007219.1
Reference Protein Sequences
RefSeq Acc Id: XP_007960160   ⟸   XM_007961969
- UniProtKB: A0A0D9RF30 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011001 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009090.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro CST9-like UniProtKB/TrEMBL
  Cystatin_dom UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
NCBI Gene LOC103215502 ENTREZGENE
PANTHER PTHR46945 UniProtKB/TrEMBL
  PTHR46945:SF2 UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A0D9RF30 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 CST9L  cystatin 9 like  LOC103215502  putative cystatin-9-like protein CST9LP1  Symbol and/or name change 5135510 APPROVED