ADCK5 (aarF domain containing kinase 5) - Rat Genome Database

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Gene: ADCK5 (aarF domain containing kinase 5) Chlorocebus sabaeus
Analyze
Symbol: ADCK5
Name: aarF domain containing kinase 5
RGD ID: 18691816
Description: ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized aarF domain-containing protein kinase 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,585,353 - 138,602,759 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,585,376 - 138,602,569 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,255,166 - 1,273,364 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
ADCK5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,585,353 - 138,602,759 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,585,376 - 138,602,569 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,255,166 - 1,273,364 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ADCK5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,373,088 - 144,393,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,373,101 - 144,393,242 (+)EnsemblGRCh38hg38GRCh38
GRCh378145,597,736 - 145,618,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,568,539 - 145,589,265 (+)NCBINCBI36Build 36hg18NCBI36
Build 348145,568,538 - 145,589,259NCBI
Celera8141,773,087 - 141,792,916 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,711,531 - 140,731,459 (+)NCBIHuRef
CHM1_18145,636,564 - 145,656,561 (+)NCBICHM1_1
T2T-CHM13v2.08145,542,413 - 145,562,879 (+)NCBIT2T-CHM13v2.0
Adck5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,460,559 - 76,480,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,460,558 - 76,480,016 (+)EnsemblGRCm39 Ensembl
GRCm381576,576,359 - 76,595,812 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,576,358 - 76,595,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,406,789 - 76,426,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,403,614 - 76,423,063 (+)NCBIMGSCv36mm8
Celera1578,069,751 - 78,089,205 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.1NCBI
Adck5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,182,275 - 110,200,088 (+)NCBIGRCr8
mRatBN7.27108,301,623 - 108,319,439 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,301,415 - 108,319,436 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,043,427 - 110,061,270 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,267,140 - 112,284,983 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,227,871 - 112,245,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,643,976 - 117,661,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,643,206 - 117,661,845 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,631,880 - 117,649,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,630,171 - 114,647,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,664,305 - 114,681,884 (+)NCBI
Celera7104,651,820 - 104,669,644 (+)NCBICelera
Cytogenetic Map7q34NCBI
Adck5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,006,845 - 3,024,426 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,006,851 - 3,024,430 (+)NCBIChiLan1.0ChiLan1.0
ADCK5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,861,248 - 161,883,023 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,391,035 - 137,411,907 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,137,617 - 141,158,662 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,131,167 - 144,149,264 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,130,992 - 144,150,133 (+)Ensemblpanpan1.1panPan2
ADCK5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,800,562 - 37,817,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,799,956 - 37,818,256 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,763,223 - 37,780,120 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,276,173 - 38,293,070 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,275,526 - 38,293,118 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,967,981 - 37,984,877 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,076,622 - 38,093,520 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,552,999 - 38,569,895 (+)NCBIUU_Cfam_GSD_1.0
Adck5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303431,185 - 444,124 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,857,446 - 7,870,377 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,857,284 - 7,870,180 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADCK5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4393,728 - 410,559 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14393,720 - 410,582 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24482,152 - 499,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Adck5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,457,934 - 12,473,701 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,457,860 - 12,473,801 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 28
Low 20 32
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000006574   ⟹   ENSCSAP00000004773
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl8138,585,376 - 138,602,569 (+)Ensembl
RefSeq Acc Id: XM_008001925   ⟹   XP_008000116
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18138,585,353 - 138,602,759 (+)NCBI
Vero_WHO_p1.0NW_0236660391,255,166 - 1,273,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008001926   ⟹   XP_008000117
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18138,592,487 - 138,602,759 (+)NCBI
Vero_WHO_p1.0NW_0236660391,255,166 - 1,273,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008001927   ⟹   XP_008000118
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18138,592,503 - 138,602,759 (+)NCBI
Vero_WHO_p1.0NW_0236660391,255,166 - 1,273,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008001928   ⟹   XP_008000119
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18138,588,965 - 138,602,759 (+)NCBI
Vero_WHO_p1.0NW_0236660391,255,166 - 1,269,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008001929   ⟹   XP_008000120
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18138,598,403 - 138,602,759 (+)NCBI
Vero_WHO_p1.0NW_0236660391,255,166 - 1,266,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037999967   ⟹   XP_037855895
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660391,255,166 - 1,269,753 (-)NCBI
RefSeq Acc Id: XP_008000116   ⟸   XM_008001925
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R834 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000119   ⟸   XM_008001928
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008000117   ⟸   XM_008001926
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008000118   ⟸   XM_008001927
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008000120   ⟸   XM_008001929
- Peptide Label: isoform X4
RefSeq Acc Id: ENSCSAP00000004773   ⟸   ENSCSAT00000006574
RefSeq Acc Id: XP_037855895   ⟸   XM_037999967
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008516 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006574.1 UniProtKB/TrEMBL
InterPro ADCK1_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  UbiB_dom UniProtKB/TrEMBL
KEGG Report csab:103237624 UniProtKB/TrEMBL
NCBI Gene ADCK5 ENTREZGENE
PANTHER AARF DOMAIN-CONTAINING KINASE 5 UniProtKB/TrEMBL
  ABC1 FAMILY PROTEIN UniProtKB/TrEMBL
Pfam ABC1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0D9R834 ENTREZGENE, UniProtKB/TrEMBL