SERPINA11 (serpin family A member 11) - Rat Genome Database

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Gene: SERPINA11 (serpin family A member 11) Chlorocebus sabaeus
Analyze
Symbol: SERPINA11
Name: serpin family A member 11
RGD ID: 18652321
Description: ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (inferred); ASSOCIATED WITH DICER1 syndrome (ortholog); Hydrops Fetalis (ortholog); pericardial effusion (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serpin A11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,223,849 - 72,236,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,223,638 - 72,232,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,450,610 - 59,463,702 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SERPINA11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,223,849 - 72,236,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,223,638 - 72,232,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,450,610 - 59,463,702 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SERPINA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,442,464 - 94,452,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,442,464 - 94,452,800 (-)EnsemblGRCh38hg38GRCh38
GRCh371494,908,801 - 94,919,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,978,554 - 93,988,875 (-)NCBINCBI36Build 36hg18NCBI36
Celera1474,964,705 - 74,975,013 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,089,005 - 75,099,380 (-)NCBIHuRef
CHM1_11494,846,601 - 94,856,919 (-)NCBICHM1_1
T2T-CHM13v2.01488,671,981 - 88,682,312 (-)NCBIT2T-CHM13v2.0
Serpina11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,946,502 - 103,956,227 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,946,502 - 103,956,216 (-)EnsemblGRCm39 Ensembl
GRCm3812103,980,243 - 103,989,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,980,243 - 103,989,957 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,218,453 - 105,228,167 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,381,305 - 104,390,971 (-)NCBIMGSCv36mm8
Celera12105,197,619 - 105,207,177 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.98NCBI
Serpina11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,668,030 - 128,677,476 (-)NCBIGRCr8
mRatBN7.26122,903,246 - 122,912,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,903,250 - 122,912,670 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,044,161 - 123,053,577 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,339,441 - 123,348,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,676,295 - 122,685,719 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,647,180 - 127,656,603 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,647,184 - 127,656,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,865,777 - 136,875,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,036,623 - 128,046,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,040,460 - 128,046,314 (-)NCBI
Celera6120,383,372 - 120,392,756 (-)NCBICelera
Cytogenetic Map6q32NCBI
SERPINA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,590,935 - 95,601,794 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,807,440 - 94,818,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,065,755 - 75,076,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,398,596 - 94,408,909 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,398,596 - 94,408,909 (-)Ensemblpanpan1.1panPan2
SERPINA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,436,710 - 63,453,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,323,933 - 63,453,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,013,258 - 63,029,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,703,227 - 63,720,226 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,703,229 - 63,720,256 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,378,847 - 63,395,495 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,431,181 - 63,447,840 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,761,856 - 63,778,513 (-)NCBIUU_Cfam_GSD_1.0
Serpina11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,973,164 - 10,982,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493684651,188 - 58,246 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493684651,074 - 57,452 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPINA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,666,070 - 115,681,790 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17115,666,071 - 115,681,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27122,785,173 - 122,800,708 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 11
Below cutoff 3 6 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000009005   ⟹   ENSCSAP00000007137
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2472,223,638 - 72,232,543 (-)Ensembl
RefSeq Acc Id: XM_037984440   ⟹   XP_037840368
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605359,450,610 - 59,463,702 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037840368 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007137.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000007137   ⟸   ENSCSAT00000009005
RefSeq Acc Id: XP_037840368   ⟸   XM_037984440
- UniProtKB: A0A0D9REU8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010918 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009005.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/TrEMBL
  Serpins superfamily UniProtKB/TrEMBL
InterPro Serpin_dom UniProtKB/TrEMBL
  Serpin_fam UniProtKB/TrEMBL
  Serpin_sf UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/TrEMBL
NCBI Gene SERPINA11 ENTREZGENE
PANTHER PTHR11461 UniProtKB/TrEMBL
  SERPIN A11 UniProtKB/TrEMBL
Pfam Serpin UniProtKB/TrEMBL
SMART SERPIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/TrEMBL
UniProt A0A0D9REU8 ENTREZGENE, UniProtKB/TrEMBL