SERPINB11 (serpin family B member 11) - Rat Genome Database

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Gene: SERPINB11 (serpin family B member 11) Chlorocebus sabaeus
Analyze
Symbol: SERPINB11
Name: serpin family B member 11
RGD ID: 18651622
Description: ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (inferred); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serpin B11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11816,075,310 - 16,096,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1816,075,796 - 16,088,987 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660609,594,695 - 9,615,769 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SERPINB11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11816,075,310 - 16,096,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1816,075,796 - 16,088,987 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660609,594,695 - 9,615,769 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SERPINB11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381863,702,304 - 63,723,893 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1863,647,579 - 63,726,432 (+)EnsemblGRCh38hg38GRCh38
GRCh371861,369,538 - 61,391,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361859,521,174 - 59,542,103 (+)NCBINCBI36Build 36hg18NCBI36
Build 341859,528,407 - 59,541,613NCBI
Celera1858,090,689 - 58,111,621 (+)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1858,071,139 - 58,092,525 (+)NCBIHuRef
CHM1_11861,366,368 - 61,387,300 (+)NCBICHM1_1
T2T-CHM13v2.01863,907,377 - 63,928,969 (+)NCBIT2T-CHM13v2.0
Serpinb11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391107,290,044 - 107,308,205 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1107,288,928 - 107,308,205 (+)EnsemblGRCm39 Ensembl
GRCm381107,362,314 - 107,380,475 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1107,361,198 - 107,380,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv371109,258,891 - 109,277,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361109,189,861 - 109,208,022 (+)NCBIMGSCv36mm8
Celera1110,200,129 - 110,218,288 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.34NCBI
Serpinb11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81323,819,416 - 23,859,240 (+)NCBIGRCr8
mRatBN7.21323,304,775 - 23,344,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1323,304,456 - 23,344,604 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1323,689,099 - 23,707,532 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01324,973,563 - 24,991,996 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01323,659,283 - 23,677,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01327,217,385 - 27,257,181 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1327,238,767 - 27,257,181 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01332,366,612 - 32,406,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41313,391,087 - 13,409,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11313,391,878 - 13,409,012 (+)NCBI
Celera1323,171,500 - 23,189,504 (+)NCBICelera
Cytogenetic Map13p11NCBI
Serpinb11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540247,564,492 - 47,585,054 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540247,564,631 - 47,585,486 (+)NCBIChiLan1.0ChiLan1.0
SERPINB11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21781,220,828 - 81,234,481 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11866,905,553 - 66,927,092 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01857,061,477 - 57,083,031 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11860,372,603 - 60,394,132 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1860,373,142 - 60,394,132 (+)Ensemblpanpan1.1panPan2
SERPINB11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,395,127 - 13,486,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,410,079 - 13,487,008 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha114,355,859 - 14,448,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,250,249 - 13,342,424 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,265,636 - 13,323,647 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,288,667 - 13,380,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,218,246 - 13,310,174 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,467,187 - 13,559,020 (-)NCBIUU_Cfam_GSD_1.0
Serpinb11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494426,692,531 - 26,711,335 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364971,930,201 - 1,950,494 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364971,931,500 - 1,950,256 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPINB11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1158,015,718 - 158,030,763 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11158,015,714 - 158,030,833 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,357,960 - 175,373,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Serpinb11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247929,679,211 - 9,712,970 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247929,679,310 - 9,712,474 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 6 12 7
Below cutoff 21 5 23

Sequence


RefSeq Acc Id: ENSCSAT00000016301   ⟹   ENSCSAP00000014220
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1816,075,796 - 16,088,987 (-)Ensembl
RefSeq Acc Id: XM_008013853   ⟹   XP_008012044
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11816,075,310 - 16,096,437 (-)NCBI
Vero_WHO_p1.0NW_0236660609,594,695 - 9,615,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013854   ⟹   XP_008012045
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11816,075,310 - 16,096,437 (-)NCBI
Vero_WHO_p1.0NW_0236660609,594,695 - 9,615,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037987984   ⟹   XP_037843912
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660609,602,069 - 9,615,769 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008012044 (Get FASTA)   NCBI Sequence Viewer  
  XP_008012045 (Get FASTA)   NCBI Sequence Viewer  
  XP_037843912 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014220
  ENSCSAP00000014220.1
RefSeq Acc Id: XP_008012045   ⟸   XM_008013854
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008012044   ⟸   XM_008013853
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S031 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000014220   ⟸   ENSCSAT00000016301
RefSeq Acc Id: XP_037843912   ⟸   XM_037987984
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S031 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018204 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016301.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/TrEMBL
InterPro Serpin_CS UniProtKB/TrEMBL
  Serpin_dom UniProtKB/TrEMBL
  Serpin_fam UniProtKB/TrEMBL
  Serpin_sf UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/TrEMBL
NCBI Gene SERPINB11 ENTREZGENE
PANTHER PTHR11461 UniProtKB/TrEMBL
  SERPIN B11 UniProtKB/TrEMBL
Pfam Serpin UniProtKB/TrEMBL
PROSITE SERPIN UniProtKB/TrEMBL
SMART SERPIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/TrEMBL
UniProt A0A0D9S031 ENTREZGENE, UniProtKB/TrEMBL