LOC103247908 (olfactory receptor 52A5) - Rat Genome Database

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Gene: LOC103247908 (olfactory receptor 52A5) Chlorocebus sabaeus
Analyze
Symbol: LOC103247908 (Ensembl: OR52A5)
Name: olfactory receptor 52A5 (Ensembl:olfactory receptor family 52 subfamily A member 5)
RGD ID: 18636164
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH delta beta-thalassemia (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,561,690 - 61,565,948 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl161,562,207 - 61,563,154 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604364,386,520 - 64,396,447 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC103247908
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,561,690 - 61,565,948 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl161,562,207 - 61,563,154 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604364,386,520 - 64,396,447 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OR52A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,128,776 - 5,138,356 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,128,776 - 5,138,356 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,150,006 - 5,159,586 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,109,498 - 5,110,448 (-)NCBINCBI36Build 36hg18NCBI36
Build 34115,109,497 - 5,110,448NCBI
Celera115,268,072 - 5,269,022 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef114,811,757 - 4,812,707 (-)NCBIHuRef
CHM1_1115,151,840 - 5,152,790 (-)NCBICHM1_1
T2T-CHM13v2.0115,188,115 - 5,197,698 (-)NCBIT2T-CHM13v2.0
Or52a5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,416,484 - 103,420,801 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7103,415,012 - 103,420,801 (-)EnsemblGRCm39 Ensembl
GRCm387103,767,277 - 103,771,594 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7103,765,805 - 103,771,594 (-)EnsemblGRCm38mm10GRCm38
MGSCv377110,915,791 - 110,920,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367103,641,098 - 103,645,415 (-)NCBIMGSCv36mm8
Celera7104,139,671 - 104,143,989 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
Or52a5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81167,572,790 - 167,573,740 (-)NCBIGRCr8
mRatBN7.21158,160,904 - 158,161,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,160,267 - 158,166,607 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1166,158,901 - 166,159,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,338,922 - 173,339,872 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,227,122 - 166,228,072 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01168,882,636 - 168,883,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,882,636 - 168,883,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,042,946 - 175,043,896 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,520,711 - 161,521,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11161,602,000 - 161,602,951 (-)NCBI
Celera1156,205,662 - 156,206,612 (-)NCBICelera
Cytogenetic Map1q32NCBI
OR52A17
(Canis lupus familiaris - dog)		 No map positions available.
LOC100519378
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.295,559,933 - 5,560,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101711266
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248176,626,543 - 6,627,493 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248176,626,543 - 6,627,493 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system
High
Medium
Low 11
Below cutoff 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008019899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000019438   ⟹   ENSCSAP00000018857
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl161,562,207 - 61,563,154 (+)Ensembl
RefSeq Acc Id: XM_008019899   ⟹   XP_008018090
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1161,561,690 - 61,565,948 (+)NCBI
Vero_WHO_p1.0NW_02366604364,386,520 - 64,396,447 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008018090 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018857.1
Reference Protein Sequences
RefSeq Acc Id: XP_008018090   ⟸   XM_008019899
- UniProtKB: A0A0D9SDB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018857   ⟸   ENSCSAT00000019438


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019348 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019438.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report csab:103247908 UniProtKB/TrEMBL
NCBI Gene LOC103247908 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 52A5 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SDB8 ENTREZGENE, UniProtKB/TrEMBL