SLC5A5 (solute carrier family 5 member 5) - Rat Genome Database

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Gene: SLC5A5 (solute carrier family 5 member 5) Chlorocebus sabaeus
Analyze
Symbol: SLC5A5
Name: solute carrier family 5 member 5
RGD ID: 18622718
Description: ENCODES a protein that exhibits iodide transmembrane transporter activity (ortholog); monoatomic anion:sodium symporter activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to forskolin (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH amenorrhea (ortholog); Breast Neoplasms (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103227950; sodium/iodide cotransporter; sodium/iodide cotransporter-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,346,361 - 16,367,833 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660743,017,539 - 3,040,333 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
plasma membrane  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC5A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,346,361 - 16,367,833 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660743,017,539 - 3,040,333 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC5A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,871,945 - 17,895,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,871,945 - 17,895,174 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,982,754 - 18,005,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,843,782 - 17,865,897 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,843,781 - 17,865,897NCBI
Celera1917,884,497 - 17,907,699 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,548,153 - 17,571,202 (+)NCBIHuRef
CHM1_11917,982,521 - 18,005,714 (+)NCBICHM1_1
T2T-CHM13v2.01918,005,850 - 18,029,260 (+)NCBIT2T-CHM13v2.0
Slc5a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,335,529 - 71,345,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,335,533 - 71,345,401 (-)EnsemblGRCm39 Ensembl
GRCm38870,882,885 - 70,892,785 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,882,889 - 70,892,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,406,788 - 73,416,656 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,812,491 - 73,821,713 (-)NCBIMGSCv36mm8
Celera873,444,192 - 73,454,060 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.36NCBI
Slc5a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,580,705 - 18,590,692 (+)NCBIGRCr8
mRatBN7.21618,546,709 - 18,556,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,546,709 - 18,556,697 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,588,940 - 18,598,864 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,721,618 - 19,731,542 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,641,881 - 18,651,805 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,297,414 - 20,307,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,297,414 - 20,307,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,154,958 - 20,164,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,046,200 - 19,056,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,046,197 - 19,056,301 (+)NCBI
Celera1618,739,349 - 18,749,322 (+)NCBICelera
Cytogenetic Map16p14NCBI
Slc5a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555243,372,539 - 3,380,758 (-)NCBIChiLan1.0ChiLan1.0
SLC5A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,734,367 - 22,760,028 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,741,167 - 21,769,744 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,352,635 - 17,377,130 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,327,410 - 18,344,480 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,327,410 - 18,344,480 (+)Ensemblpanpan1.1panPan2
SLC5A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,017,939 - 45,030,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,018,119 - 45,030,209 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,930,090 - 44,942,416 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,502,644 - 45,514,972 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,502,824 - 45,514,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,739,503 - 44,751,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,149,996 - 45,162,311 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,425,947 - 45,438,272 (-)NCBIUU_Cfam_GSD_1.0
Slc5a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,623,144 - 203,639,908 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,177,422 - 3,188,637 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,176,009 - 3,188,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC5A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,869,155 - 59,885,266 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,869,157 - 59,885,086 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,438,591 - 59,454,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc5a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,401,829 - 1,409,538 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,401,812 - 1,410,471 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037992176   ⟹   XP_037848104
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660743,017,539 - 3,040,333 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037848104 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037848104   ⟸   XM_037992176


Additional Information

Database Acc Id Source(s)
NCBI Gene SLC5A5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 SLC5A5  solute carrier family 5 member 5  LOC103227950  sodium/iodide cotransporter-like  Data merged from RGD:18666201 737654 PROVISIONAL