CUNH10orf90 (chromosome unknown C10orf90 homolog) - Rat Genome Database

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Gene: CUNH10orf90 (chromosome unknown C10orf90 homolog) Chlorocebus sabaeus
Analyze
Symbol: CUNH10orf90 (Ensembl: C10orf90)
Name: chromosome unknown C10orf90 homolog (Ensembl:chromosome 10 open reading frame 90)
RGD ID: 18592650
Description: ENCODES a protein that exhibits histone deacetylase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic G2 DNA damage checkpoint signaling (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: (E2-independent) E3 ubiquitin-conjugating enzyme FATS; C9H10orf90; centrosomal protein C10orf90 homolog; chromosome 9 open reading frame, human C10orf90
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19119,049,797 - 119,290,121 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9119,050,676 - 119,136,762 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604880,414,239 - 80,654,816 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CUNH10orf90
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19119,049,797 - 119,290,121 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9119,050,676 - 119,136,762 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604880,414,239 - 80,654,816 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C10orf90
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810126,424,997 - 126,670,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10126,424,997 - 126,798,708 (-)EnsemblGRCh38hg38GRCh38
GRCh3710128,113,566 - 128,359,262 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610128,103,561 - 128,200,000 (-)NCBINCBI36Build 36hg18NCBI36
Celera10121,887,866 - 121,984,246 (-)NCBICelera
Cytogenetic Map10q26.2NCBI
HuRef10121,800,854 - 121,897,275 (-)NCBIHuRef
CHM1_110128,395,009 - 128,491,685 (-)NCBICHM1_1
T2T-CHM13v2.010127,307,175 - 127,553,313 (-)NCBIT2T-CHM13v2.0
D7Ertd443e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397133,867,509 - 134,121,888 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7133,867,508 - 134,102,889 (-)EnsemblGRCm39 Ensembl
GRCm387134,265,780 - 134,520,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7134,265,779 - 134,501,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv377141,457,945 - 141,568,511 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367134,104,605 - 134,215,171 (-)NCBIMGSCv36mm8
Celera7134,066,072 - 134,183,685 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map778.4NCBI
C1h10orf90
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81198,489,686 - 198,723,260 (-)NCBIGRCr8
mRatBN7.21189,059,744 - 189,293,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1189,059,746 - 189,293,435 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1197,419,146 - 197,510,488 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01204,602,187 - 204,693,525 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01197,275,716 - 197,367,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01206,324,763 - 206,417,143 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1206,324,765 - 206,417,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,272,092 - 213,362,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41193,757,546 - 193,849,262 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1186,797,654 - 186,889,156 (-)NCBICelera
Cytogenetic Map1q41NCBI
CUNH10orf90
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554774,297,588 - 4,510,959 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554774,299,277 - 4,510,702 (-)NCBIChiLan1.0ChiLan1.0
C8H10orf90
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28138,276,726 - 138,533,291 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110138,282,076 - 138,538,645 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010122,987,122 - 123,243,653 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110127,258,584 - 127,505,349 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10127,259,451 - 127,357,119 (-)Ensemblpanpan1.1panPan2
C28H10orf90
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12835,514,489 - 35,721,091 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2835,515,286 - 35,720,509 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2835,572,217 - 35,778,583 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02836,072,965 - 36,279,299 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2836,072,967 - 36,278,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12835,625,533 - 35,831,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02835,621,674 - 35,828,154 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02835,877,357 - 36,083,590 (-)NCBIUU_Cfam_GSD_1.0
CUNH10orf90
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721311,005,846 - 11,249,878 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648614,311,431 - 14,499,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648614,311,976 - 14,499,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H10orf90
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14135,719,351 - 135,953,846 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114135,718,618 - 135,954,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214147,438,297 - 147,671,277 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH10orf90
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473720,361,942 - 20,613,761 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473720,519,983 - 20,638,786 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 2
Low 16 38
Below cutoff 32 3 19

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000002498   ⟹   ENSCSAP00000000806
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl9119,050,676 - 119,136,762 (-)Ensembl
RefSeq Acc Id: XM_007964393   ⟹   XP_007962584
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19119,049,797 - 119,290,121 (-)NCBI
Vero_WHO_p1.0NW_02366604880,414,239 - 80,654,816 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038009709   ⟹   XP_037865637
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604880,414,239 - 80,654,816 (-)NCBI
RefSeq Acc Id: XM_038009710   ⟹   XP_037865638
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604880,485,623 - 80,654,816 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007962584 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865637 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865638 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000806.1
Reference Protein Sequences
RefSeq Acc Id: XP_007962584   ⟸   XM_007964393
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000000806   ⟸   ENSCSAT00000002498
RefSeq Acc Id: XP_037865637   ⟸   XM_038009709
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QWR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865638   ⟸   XM_038009710
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004473 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002498.1 UniProtKB/TrEMBL
InterPro ALMS_motif UniProtKB/TrEMBL
  C10orf90_N UniProtKB/TrEMBL
NCBI Gene C9H10orf90 ENTREZGENE
PANTHER ALMS1-RELATED UniProtKB/TrEMBL
  PTHR21553:SF24 UniProtKB/TrEMBL
Pfam ALMS_motif UniProtKB/TrEMBL
  Centro_C10orf90 UniProtKB/TrEMBL
UniProt A0A0D9QWR7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 CUNH10orf90  chromosome unknown C10orf90 homolog  C9H10orf90  chromosome 9 open reading frame, human C10orf90  Symbol and/or name change 5135510 APPROVED