SPART (spartin) - Rat Genome Database

Name: SPART
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SPART (spartin) Chlorocebus sabaeus

Analyze

Symbol:

SPART

Name:

spartin

RGD ID:

18590957

Description:

ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN abscission (ortholog); adipose tissue development (ortholog); BMP signaling pathway (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); esophagus adenocarcinoma (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

spastic paraplegia 20 (Troyer syndrome); SPG20

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPART (spartin)	NCBI	Ortholog
Mus musculus (house mouse):	Spart (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Spart (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spart (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPART (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPART (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spart (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPART (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spart (spartin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	14,887,896 - 14,925,296 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	14,886,633 - 14,924,865 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	29,368,466 - 29,405,924 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebellar ataxia (ISO)

esophagus adenocarcinoma (ISO)

genetic disease (ISO)

hereditary spastic paraplegia (ISO)

Troyer syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

abscission (ISO)

adipose tissue development (ISO)

BMP signaling pathway (ISO)

cell division (IEA)

collateral sprouting in absence of injury (ISO)

lipid droplet organization (ISO)

negative regulation of BMP signaling pathway (IEA,ISO)

negative regulation of collateral sprouting in absence of injury (ISO)

neuromuscular process (ISO)

regulation of mitochondrial membrane potential (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

intracellular membrane-bounded organelle (ISO)

lipid droplet (ISO)

midbody (ISO)

mitochondrial outer membrane (ISO)

plasma membrane (IEA)

synapse (ISO)

Molecular Function

protein binding (ISO)

ubiquitin protein ligase binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SPART
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	14,887,896 - 14,925,296 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	14,886,633 - 14,924,865 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	29,368,466 - 29,405,924 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SPART
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	36,301,638 - 36,370,180 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	36,301,638 - 36,370,180 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	36,875,775 - 36,944,317 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	35,773,775 - 35,818,453 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	35,773,776 - 35,818,453	NCBI
Celera	13	17,942,963 - 18,011,514 (-)	NCBI		Celera
Cytogenetic Map	13	q13.3	NCBI
HuRef	13	17,687,578 - 17,756,402 (-)	NCBI		HuRef
CHM1_1	13	36,843,258 - 36,911,860 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	35,521,139 - 35,589,682 (-)	NCBI		T2T-CHM13v2.0

Spart
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	55,019,500 - 55,044,753 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	55,019,529 - 55,044,743 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	55,112,108 - 55,137,332 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	55,112,108 - 55,137,322 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	54,916,030 - 54,941,254 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	55,200,069 - 55,223,886 (+)	NCBI		MGSCv36	mm8
Celera	3	54,829,886 - 54,855,111 (+)	NCBI		Celera
Cytogenetic Map	3	C	NCBI
cM Map	3	26.53	NCBI

Spart
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	141,442,770 - 141,469,388 (+)	NCBI		GRCr8
mRatBN7.2	2	139,292,630 - 139,319,248 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	139,292,355 - 139,319,248 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	145,867,478 - 145,894,087 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	143,978,916 - 144,005,524 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	138,611,347 - 138,637,957 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	144,522,382 - 144,548,968 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,522,072 - 144,548,917 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	163,938,864 - 163,965,175 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	144,335,236 - 144,362,246 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	144,290,137 - 144,310,595 (+)	NCBI
Celera	2	133,776,474 - 133,803,061 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

Spart
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	9,758,053 - 9,786,644 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	9,758,159 - 9,786,468 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPART
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	35,827,216 - 35,894,535 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	26,933,228 - 27,000,539 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	17,514,720 - 17,582,011 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	35,944,556 - 35,989,775 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	35,945,938 - 35,989,774 (-)	Ensembl	panpan1.1		panPan2

SPART
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	4,256,177 - 4,302,854 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	4,232,533 - 4,316,363 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	4,288,086 - 4,334,989 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	4,357,038 - 4,404,379 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	4,333,554 - 4,389,355 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	4,264,422 - 4,311,754 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	4,260,116 - 4,307,054 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	4,323,956 - 4,371,292 (+)	NCBI		UU_Cfam_GSD_1.0

Spart
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	165,426,341 - 165,484,173 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	30,467,964 - 30,504,624 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	30,467,975 - 30,525,880 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPART
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	12,313,210 - 12,374,645 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	12,313,211 - 12,346,226 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	12,264,432 - 12,281,379 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Spart
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624776	1,065,600 - 1,104,938 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36		39
Low		20	21
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007960137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007960138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007960139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007960140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037986811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037986812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015973 ⟹ ENSCSAP00000013898

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	3	14,886,633 - 14,924,865 (-)	Ensembl

RefSeq Acc Id:

XM_007960137 ⟹ XP_007958328

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	3	14,887,896 - 14,924,891 (-)	NCBI
Vero_WHO_p1.0	NW_023666057	29,368,807 - 29,405,919 (+)	NCBI

Sequence:

show sequence

GAGGCCTTGGGAACCTGGGGACCGGTCCCCGGCGAGCGCAGCGGCGACCCGTGTGAGGGAGCGG
GAGCTGGCCAGTGCCGCGGCGGCCGCGCGGGGAGATCTCGAGGCGACGCCGGGGCGCCCGAGGT
CTGGAAGGCGCAGAAATGGAGCAAGAGCCACAAAATGGAGAACCTGCTGAAATTAAGATCATCA
GAGAAGCATATAAGAAGGCCTTTTTGTTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCA
GAAGGAAGAAGCAAAGAACTACTATAAGCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATT
TCATCAACAGAGTCTGAACACACAGGCCCTGGGTGGGAATCTGCTAGACAAATGCAACAGAAAA
TGAAAGAAACACTACAGAATGTACGCACCAGGCTGGAAATTCTAGAGAAGGGTCTTGCCACTTC
TCTACAGAATGATCTTCAGGAGGTGCCCAAGTTATATCCAGAATTTCCACCTAAAGACATGTGT
GAAAAATTACCAGAGCCTCAGTCTTTTAGTTCAGCTCCTCAGCATGCTGAAGTAGATGGAAACA
CCTCAACTCCAAGTGCAGGGGCAGTTGCTGCGCCTGCTTCTCTCTCTTTACCATCCCAAAGTTG
TCCAGCAGAAGCTCCTCCTGCTTATACTCCTCAGGCTGCTGAAGGTCACTACACTGTATCCTAT
GGAACAGATTCTGGGGAGTTTTCATCAGTTGGAGAAGAGTTTTATAGGAATCATTCTCAGCCGC
CGCCTCTTGAGACTTTAGGGCTAGATGCAGATGAATTGATTTTGATACCAAATGGAGTACAGAT
TTTTTTTGTAAATCCTGCAGGGGAGGTTAGTGCACCTTCGTATCCTGGGTACCTTCGAATTGTG
AGGTTTTTGGATAATTCTCTTGATACGGTTCTAAACCGTCCTCCCGGGTTTCTTCAGGTTTGTG
ACTGGTTGTATCCTCTAGTTCCTGATAGATCTCCAGTTCTGAAATGTACTGCAGGAGCCTACAT
GTTTCCTGATACAATGCTGCAAGCAGCAGGATGCTTTGTGGGGGTCGTCCTGTCCTCTGAGTTA
CCAGAGGATGATAGAGAGCTCTTTGAGGATCTATTAAGGCAAATGTCTGACCTTCGGCTCCAGG
CCAACTGGAACAGAGCAGAAGAAGAAAATGAATTCCAAATCCCTGGAAGAACTAGACCCTCCTC
TGACCAACTAAAAGAAGCCTCGGGCACTGATGTGAAACAGTTGGACCAAGGCAATAAGGATGTA
CGTCATAAAGGAAAACGTGGAAAAAGGGCTAAAGATACTTCAAGTGAAGAAGTTAACCTGAGTC
ACATTGTACCATGTGAGCCAGTTCCAGAAGAAAAATCAAAAGAATTACCTGAATGGAGTGAGAA
AGTGGCTCACAACATTTTGTCAGGTGCTTCCTGGGTGAGTTGGGGTTTAATCAAAGGTGCTGAG
TTTACTGGCAAAGCAATCCAGAAAGGTGCTTCTAAACTCCGAGAGCGGATTCAACCAGAAGAAA
AACCTGTGGAAGTTAGTCCAGCTGTCACCAAGGGACTTTATATAGCGAAGCAAGCTACAGGAGG
AGCAGCAAAAGTCAGTCAGTTCCTGGTTGATGGAGTTTGCACTGTAGCAAATTGCGTTGGAAAA
GAACTAGCTCCACATGTCAAGAAGCATGGAAGCAAACTAGTTCCAGAATCTCTTAAAAAAGACA
AAGATGGGAAATCTCCTCTGGATGGTGCCATGGTTGTAGCAGCAAGTAGTGTTCAAGGATTTTC
AACTGTTTGGCAAGGATTGGAATGTGCAGCTAAATGCATTGTTAACAATGTTTCCGCAGAAACT
GTACAAACTGTCAGATATAAATACGGGTATAATGCAGGAGAAGCTACCCACAATGCGGTGGATT
CTGCAGTCAATGTTGGCGTAACTGCCTACAATATTAACAACATTGGTATCAAAGCAATGGTGAA
GAAAACTGCAACACAAACAGGACACACTCTCCTTGAGGACTATCAGATAGTTGATAATTCTCAG
AGGGAAAATCAAGAAGGAGCAGCAAATGTCAACGTGAGAGGGGAGAAGGATGAGCAGACGAAGG
AAGTAAAGGAGGCAAAGAAGAAAGATAAATGATGGAGTGCTGGGAATCACCTATACCAAAGCCT
TATGAAATGGATGAAATTTTGTTATGTAAGCAAATGTGGAATTCCTCACAGATTAACCAGTATT
TTTTAAATGTATTCATTCCTACAAATTAACTTTCATAAATTTTATGGCATGTCTTCTATTTAAA
AGGAAAAGAATAAGTATTCTTGCATCTGGCCTTAGAAATGTGAAGTAATATTCTCAAGTTTATT
TTTTCCAAGTGTAGCTGAAATATTTTTGCAGGTAAAATAAAGCTAATAATGTGCTATTTAGACC
TTATTAAACCTAATGTTGAACTATTTTTATATGTGCTATATTTCAGAAAGCAAATTAGGAAACT
ATATATTTGCTTAAAAATTGGCATTTAGTAACCTTAATTCTTTTTATAGAAGGCTTAAAGTATT
GTCTCCTCTTTTTGCACTAAGTGTGGATTTTTTTAGATGCTTCTCAAAATTTTCAGTGTGTAAG
CTAAACCTAATCCTAAACTAAGAATTCTCAAAAAGACTTGTTCAAAACGGAAAGACTGATGAAA
AGTAAAATGGACTACTTTTGTAACTTACCTGTTTGTTAGGAAATGGAATGGTCTTTTTGATTTA
AAATGAATAAAAATAGATTATTACATCTTTTGTATTGAGACCGATTGTTCTCTTATGAGCCTAG
GACATTTGGGAACATGATTGTTTTGTATTAAAATTCAAAGTGATTATTATCAGCTTAATTGGAT
TAAAAAAGTACTTCAAGAAATTATTTAATCATATCTGCTTCTGTTTTTCCAAAAGGTTAAAACT
TGTAAAAAAAAATATATATATATATAAACAGAATTGAGTTTACTAATGGTAAACATTTTTATTC
TGGGATTCGGTCATTGGAATTTATATTAAAAGACAAGTTATTAAAAAGGAAAGGTTCGTTCATA
ATCAAGGTAAAGAATATGAAAACCTTAGGCGTAATCCATGGTGGATAGGCATTATGGTTTCCAC
TTTGGCAGGAGGCAGACTATTCACAGACCTATTTACTTACATGGGCTAAAAAACTATGTAACTA
AATACCTAATGGTATTTTATTTTTGTTTACTGAATTTAAGAGATTGGTGTTAGTTTTCATAGCT
GTAGTCCATTCTAATAATTTCTGATCTTCTAGTGGCTACTTAGACATTATTTGAAGCTGTCTGA
AGAATGCACTTTATGAATTAAAAAACTCTGAATTGCCTGACCTCATTATCACATGGGCTTATAT
TTTGGGAACACATGGAACTGATGTAGGCTTTTCCTAAGACCAAGGATAATGTACTAGTTGATAA
AATGGAAATAAAAGTGAATTGGTAAATA

hide sequence

RefSeq Acc Id:

XM_007960138 ⟹ XP_007958329

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	3	14,887,896 - 14,925,296 (-)	NCBI
Vero_WHO_p1.0	NW_023666057	29,368,466 - 29,405,924 (+)	NCBI

Sequence:

show sequence

GCGCAGGCGCGGAGCAGCCGACGTGGCCGCAGGGGACTGTGCCTGGGGGGGTCTGCGCGAAACC
GCTGACTCGCGAGGTTCTCTGTCGCCTGCCGCCCTCGCTCCTTTTCTCCCCTTCTACAGTGTTA
CGGTGACTCTTGGGTTCGAAGGGGACGGACGTCCTCCCACGTACCATTTAGAGAAATGGAGCAA
GAGCCACAAAATGGAGAACCTGCTGAAATTAAGATCATCAGAGAAGCATATAAGAAGGCCTTTT
TGTTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCAGAAGGAAGAAGCAAAGAACTACTA
TAAGCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATTTCATCAACAGAGTCTGAACACACA
GGCCCTGGGTGGGAATCTGCTAGACAAATGCAACAGAAAATGAAAGAAACACTACAGAATGTAC
GCACCAGGCTGGAAATTCTAGAGAAGGGTCTTGCCACTTCTCTACAGAATGATCTTCAGGAGGT
GCCCAAGTTATATCCAGAATTTCCACCTAAAGACATGTGTGAAAAATTACCAGAGCCTCAGTCT
TTTAGTTCAGCTCCTCAGCATGCTGAAGTAGATGGAAACACCTCAACTCCAAGTGCAGGGGCAG
TTGCTGCGCCTGCTTCTCTCTCTTTACCATCCCAAAGTTGTCCAGCAGAAGCTCCTCCTGCTTA
TACTCCTCAGGCTGCTGAAGGTCACTACACTGTATCCTATGGAACAGATTCTGGGGAGTTTTCA
TCAGTTGGAGAAGAGTTTTATAGGAATCATTCTCAGCCGCCGCCTCTTGAGACTTTAGGGCTAG
ATGCAGATGAATTGATTTTGATACCAAATGGAGTACAGATTTTTTTTGTAAATCCTGCAGGGGA
GGTTAGTGCACCTTCGTATCCTGGGTACCTTCGAATTGTGAGGTTTTTGGATAATTCTCTTGAT
ACGGTTCTAAACCGTCCTCCCGGGTTTCTTCAGGTTTGTGACTGGTTGTATCCTCTAGTTCCTG
ATAGATCTCCAGTTCTGAAATGTACTGCAGGAGCCTACATGTTTCCTGATACAATGCTGCAAGC
AGCAGGATGCTTTGTGGGGGTCGTCCTGTCCTCTGAGTTACCAGAGGATGATAGAGAGCTCTTT
GAGGATCTATTAAGGCAAATGTCTGACCTTCGGCTCCAGGCCAACTGGAACAGAGCAGAAGAAG
AAAATGAATTCCAAATCCCTGGAAGAACTAGACCCTCCTCTGACCAACTAAAAGAAGCCTCGGG
CACTGATGTGAAACAGTTGGACCAAGGCAATAAGGATGTACGTCATAAAGGAAAACGTGGAAAA
AGGGCTAAAGATACTTCAAGTGAAGAAGTTAACCTGAGTCACATTGTACCATGTGAGCCAGTTC
CAGAAGAAAAATCAAAAGAATTACCTGAATGGAGTGAGAAAGTGGCTCACAACATTTTGTCAGG
TGCTTCCTGGGTGAGTTGGGGTTTAATCAAAGGTGCTGAGTTTACTGGCAAAGCAATCCAGAAA
GGTGCTTCTAAACTCCGAGAGCGGATTCAACCAGAAGAAAAACCTGTGGAAGTTAGTCCAGCTG
TCACCAAGGGACTTTATATAGCGAAGCAAGCTACAGGAGGAGCAGCAAAAGTCAGTCAGTTCCT
GGTTGATGGAGTTTGCACTGTAGCAAATTGCGTTGGAAAAGAACTAGCTCCACATGTCAAGAAG
CATGGAAGCAAACTAGTTCCAGAATCTCTTAAAAAAGACAAAGATGGGAAATCTCCTCTGGATG
GTGCCATGGTTGTAGCAGCAAGTAGTGTTCAAGGATTTTCAACTGTTTGGCAAGGATTGGAATG
TGCAGCTAAATGCATTGTTAACAATGTTTCCGCAGAAACTGTACAAACTGTCAGATATAAATAC
GGGTATAATGCAGGAGAAGCTACCCACAATGCGGTGGATTCTGCAGTCAATGTTGGCGTAACTG
CCTACAATATTAACAACATTGGTATCAAAGCAATGGTGAAGAAAACTGCAACACAAACAGGACA
CACTCTCCTTGAGGACTATCAGATAGTTGATAATTCTCAGAGGGAAAATCAAGAAGGAGCAGCA
AATGTCAACGTGAGAGGGGAGAAGGATGAGCAGACGAAGGAAGTAAAGGAGGCAAAGAAGAAAG
ATAAATGATGGAGTGCTGGGAATCACCTATACCAAAGCCTTATGAAATGGATGAAATTTTGTTA
TGTAAGCAAATGTGGAATTCCTCACAGATTAACCAGTATTTTTTAAATGTATTCATTCCTACAA
ATTAACTTTCATAAATTTTATGGCATGTCTTCTATTTAAAAGGAAAAGAATAAGTATTCTTGCA
TCTGGCCTTAGAAATGTGAAGTAATATTCTCAAGTTTATTTTTTCCAAGTGTAGCTGAAATATT
TTTGCAGGTAAAATAAAGCTAATAATGTGCTATTTAGACCTTATTAAACCTAATGTTGAACTAT
TTTTATATGTGCTATATTTCAGAAAGCAAATTAGGAAACTATATATTTGCTTAAAAATTGGCAT
TTAGTAACCTTAATTCTTTTTATAGAAGGCTTAAAGTATTGTCTCCTCTTTTTGCACTAAGTGT
GGATTTTTTTAGATGCTTCTCAAAATTTTCAGTGTGTAAGCTAAACCTAATCCTAAACTAAGAA
TTCTCAAAAAGACTTGTTCAAAACGGAAAGACTGATGAAAAGTAAAATGGACTACTTTTGTAAC
TTACCTGTTTGTTAGGAAATGGAATGGTCTTTTTGATTTAAAATGAATAAAAATAGATTATTAC
ATCTTTTGTATTGAGACCGATTGTTCTCTTATGAGCCTAGGACATTTGGGAACATGATTGTTTT
GTATTAAAATTCAAAGTGATTATTATCAGCTTAATTGGATTAAAAAAGTACTTCAAGAAATTAT
TTAATCATATCTGCTTCTGTTTTTCCAAAAGGTTAAAACTTGTAAAAAAAAATATATATATATA
TAAACAGAATTGAGTTTACTAATGGTAAACATTTTTATTCTGGGATTCGGTCATTGGAATTTAT
ATTAAAAGACAAGTTATTAAAAAGGAAAGGTTCGTTCATAATCAAGGTAAAGAATATGAAAACC
TTAGGCGTAATCCATGGTGGATAGGCATTATGGTTTCCACTTTGGCAGGAGGCAGACTATTCAC
AGACCTATTTACTTACATGGGCTAAAAAACTATGTAACTAAATACCTAATGGTATTTTATTTTT
GTTTACTGAATTTAAGAGATTGGTGTTAGTTTTCATAGCTGTAGTCCATTCTAATAATTTCTGA
TCTTCTAGTGGCTACTTAGACATTATTTGAAGCTGTCTGAAGAATGCACTTTATGAATTAAAAA
ACTCTGAATTGCCTGACCTCATTATCACATGGGCTTATATTTTGGGAACACATGGAACTGATGT
AGGCTTTTCCTAAGACCAAGGATAATGTACTAGTTGATAAAATGGAAATAAAAGTGAATTGGTA
AATA

hide sequence

RefSeq Acc Id:

XM_007960139 ⟹ XP_007958330

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	3	14,887,896 - 14,924,891 (-)	NCBI
Vero_WHO_p1.0	NW_023666057	29,368,840 - 29,405,919 (+)	NCBI

Sequence:

show sequence

GAGGCCTTGGGAACCTGGGGACCGGTCCCCGGCGAGCGCAGCGGCGACCCGTGTGAGGGAGCGG
GAGCTGGCCAGTGCCGCGGCGGCCGCGCGGGGAGATCTCGAGGCGACGCCGGGGCGCCCGAGAA
ATGGAGCAAGAGCCACAAAATGGAGAACCTGCTGAAATTAAGATCATCAGAGAAGCATATAAGA
AGGCCTTTTTGTTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCAGAAGGAAGAAGCAAA
GAACTACTATAAGCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATTTCATCAACAGAGTCT
GAACACACAGGCCCTGGGTGGGAATCTGCTAGACAAATGCAACAGAAAATGAAAGAAACACTAC
AGAATGTACGCACCAGGCTGGAAATTCTAGAGAAGGGTCTTGCCACTTCTCTACAGAATGATCT
TCAGGAGGTGCCCAAGTTATATCCAGAATTTCCACCTAAAGACATGTGTGAAAAATTACCAGAG
CCTCAGTCTTTTAGTTCAGCTCCTCAGCATGCTGAAGTAGATGGAAACACCTCAACTCCAAGTG
CAGGGGCAGTTGCTGCGCCTGCTTCTCTCTCTTTACCATCCCAAAGTTGTCCAGCAGAAGCTCC
TCCTGCTTATACTCCTCAGGCTGCTGAAGGTCACTACACTGTATCCTATGGAACAGATTCTGGG
GAGTTTTCATCAGTTGGAGAAGAGTTTTATAGGAATCATTCTCAGCCGCCGCCTCTTGAGACTT
TAGGGCTAGATGCAGATGAATTGATTTTGATACCAAATGGAGTACAGATTTTTTTTGTAAATCC
TGCAGGGGAGGTTAGTGCACCTTCGTATCCTGGGTACCTTCGAATTGTGAGGTTTTTGGATAAT
TCTCTTGATACGGTTCTAAACCGTCCTCCCGGGTTTCTTCAGGTTTGTGACTGGTTGTATCCTC
TAGTTCCTGATAGATCTCCAGTTCTGAAATGTACTGCAGGAGCCTACATGTTTCCTGATACAAT
GCTGCAAGCAGCAGGATGCTTTGTGGGGGTCGTCCTGTCCTCTGAGTTACCAGAGGATGATAGA
GAGCTCTTTGAGGATCTATTAAGGCAAATGTCTGACCTTCGGCTCCAGGCCAACTGGAACAGAG
CAGAAGAAGAAAATGAATTCCAAATCCCTGGAAGAACTAGACCCTCCTCTGACCAACTAAAAGA
AGCCTCGGGCACTGATGTGAAACAGTTGGACCAAGGCAATAAGGATGTACGTCATAAAGGAAAA
CGTGGAAAAAGGGCTAAAGATACTTCAAGTGAAGAAGTTAACCTGAGTCACATTGTACCATGTG
AGCCAGTTCCAGAAGAAAAATCAAAAGAATTACCTGAATGGAGTGAGAAAGTGGCTCACAACAT
TTTGTCAGGTGCTTCCTGGGTGAGTTGGGGTTTAATCAAAGGTGCTGAGTTTACTGGCAAAGCA
ATCCAGAAAGGTGCTTCTAAACTCCGAGAGCGGATTCAACCAGAAGAAAAACCTGTGGAAGTTA
GTCCAGCTGTCACCAAGGGACTTTATATAGCGAAGCAAGCTACAGGAGGAGCAGCAAAAGTCAG
TCAGTTCCTGGTTGATGGAGTTTGCACTGTAGCAAATTGCGTTGGAAAAGAACTAGCTCCACAT
GTCAAGAAGCATGGAAGCAAACTAGTTCCAGAATCTCTTAAAAAAGACAAAGATGGGAAATCTC
CTCTGGATGGTGCCATGGTTGTAGCAGCAAGTAGTGTTCAAGGATTTTCAACTGTTTGGCAAGG
ATTGGAATGTGCAGCTAAATGCATTGTTAACAATGTTTCCGCAGAAACTGTACAAACTGTCAGA
TATAAATACGGGTATAATGCAGGAGAAGCTACCCACAATGCGGTGGATTCTGCAGTCAATGTTG
GCGTAACTGCCTACAATATTAACAACATTGGTATCAAAGCAATGGTGAAGAAAACTGCAACACA
AACAGGACACACTCTCCTTGAGGACTATCAGATAGTTGATAATTCTCAGAGGGAAAATCAAGAA
GGAGCAGCAAATGTCAACGTGAGAGGGGAGAAGGATGAGCAGACGAAGGAAGTAAAGGAGGCAA
AGAAGAAAGATAAATGATGGAGTGCTGGGAATCACCTATACCAAAGCCTTATGAAATGGATGAA
ATTTTGTTATGTAAGCAAATGTGGAATTCCTCACAGATTAACCAGTATTTTTTAAATGTATTCA
TTCCTACAAATTAACTTTCATAAATTTTATGGCATGTCTTCTATTTAAAAGGAAAAGAATAAGT
ATTCTTGCATCTGGCCTTAGAAATGTGAAGTAATATTCTCAAGTTTATTTTTTCCAAGTGTAGC
TGAAATATTTTTGCAGGTAAAATAAAGCTAATAATGTGCTATTTAGACCTTATTAAACCTAATG
TTGAACTATTTTTATATGTGCTATATTTCAGAAAGCAAATTAGGAAACTATATATTTGCTTAAA
AATTGGCATTTAGTAACCTTAATTCTTTTTATAGAAGGCTTAAAGTATTGTCTCCTCTTTTTGC
ACTAAGTGTGGATTTTTTTAGATGCTTCTCAAAATTTTCAGTGTGTAAGCTAAACCTAATCCTA
AACTAAGAATTCTCAAAAAGACTTGTTCAAAACGGAAAGACTGATGAAAAGTAAAATGGACTAC
TTTTGTAACTTACCTGTTTGTTAGGAAATGGAATGGTCTTTTTGATTTAAAATGAATAAAAATA
GATTATTACATCTTTTGTATTGAGACCGATTGTTCTCTTATGAGCCTAGGACATTTGGGAACAT
GATTGTTTTGTATTAAAATTCAAAGTGATTATTATCAGCTTAATTGGATTAAAAAAGTACTTCA
AGAAATTATTTAATCATATCTGCTTCTGTTTTTCCAAAAGGTTAAAACTTGTAAAAAAAAATAT
ATATATATATAAACAGAATTGAGTTTACTAATGGTAAACATTTTTATTCTGGGATTCGGTCATT
GGAATTTATATTAAAAGACAAGTTATTAAAAAGGAAAGGTTCGTTCATAATCAAGGTAAAGAAT
ATGAAAACCTTAGGCGTAATCCATGGTGGATAGGCATTATGGTTTCCACTTTGGCAGGAGGCAG
ACTATTCACAGACCTATTTACTTACATGGGCTAAAAAACTATGTAACTAAATACCTAATGGTAT
TTTATTTTTGTTTACTGAATTTAAGAGATTGGTGTTAGTTTTCATAGCTGTAGTCCATTCTAAT
AATTTCTGATCTTCTAGTGGCTACTTAGACATTATTTGAAGCTGTCTGAAGAATGCACTTTATG
AATTAAAAAACTCTGAATTGCCTGACCTCATTATCACATGGGCTTATATTTTGGGAACACATGG
AACTGATGTAGGCTTTTCCTAAGACCAAGGATAATGTACTAGTTGATAAAATGGAAATAAAAGT
GAATTGGTAAATA

hide sequence

RefSeq Acc Id:

XM_037986811 ⟹ XP_037842739

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666057	29,368,466 - 29,405,924 (+)	NCBI

RefSeq Acc Id:

XM_037986812 ⟹ XP_037842740

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666057	29,369,626 - 29,405,919 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007958328	(Get FASTA)	NCBI Sequence Viewer
	XP_007958329	(Get FASTA)	NCBI Sequence Viewer
	XP_007958330	(Get FASTA)	NCBI Sequence Viewer
	XP_037842739	(Get FASTA)	NCBI Sequence Viewer
	XP_037842740	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013898
	ENSCSAP00000013898.1

RefSeq Acc Id:	XP_007958329 ⟸ XM_007960138
- UniProtKB:	A0A0D9RZ59 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007958330 ⟸ XM_007960139
- UniProtKB:	A0A0D9RZ59 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007958328 ⟸ XM_007960137
- UniProtKB:	A0A0D9RZ59 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000013898 ⟸ ENSCSAT00000015973

RefSeq Acc Id:	XP_037842739 ⟸ XM_037986811
- UniProtKB:	A0A0D9RZ59 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037842740 ⟸ XM_037986812
- UniProtKB:	A0A0D9RZ59 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017878	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015973.1	UniProtKB/TrEMBL
Gene3D-CATH	Phosphotransferase system, lactose/cellobiose-type IIA subunit	UniProtKB/TrEMBL
InterPro	MIT	UniProtKB/TrEMBL
	MIT_dom_sf	UniProtKB/TrEMBL
	Senescence/spartin	UniProtKB/TrEMBL
	Spartin-like	UniProtKB/TrEMBL
KEGG Report	csab:103214279	UniProtKB/TrEMBL
NCBI Gene	SPART	ENTREZGENE
PANTHER	PTHR21068	UniProtKB/TrEMBL
	SPARTIN	UniProtKB/TrEMBL
Pfam	Senescence	UniProtKB/TrEMBL
SMART	MIT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF116846	UniProtKB/TrEMBL
UniProt	A0A0D9RZ59	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM