MSH5 (mutS homolog 5) - Rat Genome Database

Name: MSH5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: MSH5 (mutS homolog 5) Chlorocebus sabaeus

Analyze

Symbol:

MSH5

Name:

mutS homolog 5

RGD ID:

18588641

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent DNA damage sensor activity (inferred); DNA binding (inferred); INVOLVED IN female gamete generation (ortholog); homologous chromosome pairing at meiosis (ortholog); meiosis I (ortholog); ASSOCIATED WITH azoospermia (ortholog); hepatocellular carcinoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN synaptonemal complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

mutS protein homolog 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MSH5 (mutS homolog 5)	NCBI	Ortholog
Mus musculus (house mouse):	Msh5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Msh5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Msh5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MSH5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MSH5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Msh5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MSH5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Msh5 (mutS homolog 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,260,979 - 40,283,872 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	40,261,125 - 40,282,511 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	31,652,919 - 31,675,016 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

azoospermia (ISO)

hepatocellular carcinoma (ISO)

hereditary breast ovarian cancer syndrome (ISO)

lung non-small cell carcinoma (ISO)

primary ovarian insufficiency 13 (ISO)

primary ovarian insufficiency 16 (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

spermatogenic failure 3 (ISO)

Spermatogenic Failure 74 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chiasma assembly (IEA)

DNA repair (IEA)

female gamete generation (ISO)

homologous chromosome pairing at meiosis (ISO)

meiosis I (IEA,ISO)

mismatch repair (IEA)

Cellular Component

MutSalpha complex (IEA)

nucleus (IEA)

synaptonemal complex (ISO)

Molecular Function

ATP binding (IEA)

ATP-dependent DNA damage sensor activity (IEA)

DNA binding (IEA)

double-stranded DNA binding (IEA)

mismatched DNA binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

MSH5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,260,979 - 40,283,872 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	40,261,125 - 40,282,511 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	31,652,919 - 31,675,016 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

MSH5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	31,740,005 - 31,762,676 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	31,739,677 - 31,762,676 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	31,707,782 - 31,730,453 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	31,815,753 - 31,838,432 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	31,815,755 - 31,840,601	NCBI
Celera	6	33,305,954 - 33,328,700 (+)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	31,493,957 - 31,516,883 (+)	NCBI		HuRef
CHM1_1	6	31,709,839 - 31,732,578 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	31,593,029 - 31,615,723 (+)	NCBI		T2T-CHM13v2.0

Msh5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,247,581 - 35,267,842 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,247,581 - 35,265,721 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,028,605 - 35,046,997 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,028,605 - 35,046,745 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	35,165,550 - 35,183,668 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,636,661 - 34,654,678 (-)	NCBI		MGSCv36	mm8
Celera	17	38,124,846 - 38,143,436 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.57	NCBI

Msh5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,779,180 - 3,797,996 (+)	NCBI		GRCr8
mRatBN7.2	20	3,773,867 - 3,793,337 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,776,942 - 3,793,336 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,476,493 - 4,492,884 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,838,546 - 3,854,939 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,376,404 - 4,392,844 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	5,020,690 - 5,037,125 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,020,667 - 5,037,088 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,093,706 - 7,110,044 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	3,845,731 - 3,862,011 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	3,846,041 - 3,862,242 (+)	NCBI
Celera	20	4,233,160 - 4,249,400 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Msh5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	279,744 - 297,153 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	275,976 - 297,268 (+)	NCBI	ChiLan1.0	ChiLan1.0

MSH5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,217,203 - 46,239,558 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,178,711 - 42,201,176 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,401,343 - 31,424,665 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,289,318 - 32,313,411 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	32,290,511 - 32,311,085 (+)	Ensembl	panpan1.1		panPan2

MSH5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,221,278 - 1,243,042 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,357,836 - 1,379,567 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,364,526 - 1,386,294 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,364,451 - 1,386,294 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,223,762 - 1,245,520 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,290,998 - 1,312,682 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,358,882 - 1,380,614 (+)	NCBI		UU_Cfam_GSD_1.0

Msh5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	35,767,176 - 35,785,306 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,777,570 - 1,793,711 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,776,038 - 1,794,152 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSH5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,852,918 - 23,872,755 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	23,852,864 - 23,872,760 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Msh5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,453,902 - 24,473,051 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,453,750 - 24,477,574 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	29	18	58
Below cutoff	7	2	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007973088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007973101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005242988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC244030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACDXN010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000006757 ⟹ ENSCSAP00000004953

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	17	40,261,125 - 40,282,511 (-)	Ensembl

RefSeq Acc Id:

XM_007973092 ⟹ XP_007971283

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	17	40,260,979 - 40,283,869 (-)	NCBI
Vero_WHO_p1.0	NW_023666044	31,652,944 - 31,675,016 (+)	NCBI

Sequence:

show sequence

CTCCCTCCCTTCCTTCTTTCCTTCCCTTCTTTCTCCCTAACCTCCCCTGCAACACACACACGCA
CAAATAAGCTTTATGGAGCAGGGACTTCGTTATGTTTACCGCTTTGAGTCTATCCCCTGGCCCA
GAATAGGCACTAAATAAATAGTTGCCGAATGCATGAATGATACCTCTCTGTCTTCAGGGGTGTG
TAGATGTGCGAAGGGGTATGGGCATGTCCCAGTAGGGGTGTAGGTGTTCTTCTGATCAGATCTA
CTTCTCTCTGCCAGAATTTGATGTAATTCGAAAGCTTCCACCTCCACTTGAGGGGTTTAAATAA
TAAATTAGGCCCCGTCGTGCCATTATGGGGGTGGTCATACCCTGCACCCGGGAAACAGGCACGG
TAGGAGGGCTGAGGCAGGAGTCCTGCTTGTTTCCGCTTATTTGAAACATCGCTCATTTAGGTCT
TACTTTGTTTGCCAGGCACTGTTCTAAGCTCTGTATAAATATTAACTCAGAAGGTACAAATACT
AACTTAGAGTTGTTGCAGGGGAAAAAAAAAAAAGGCGCCTCTGGCTCAAAACTCCCGCAACGCT
CCCAAACCCCCTCCGGGAACCGAGACTACCGCCCCTCGTCCGACCTTCTCGCGGGCTTTCCACT
GCGTCAATCAAAGCCCAGAAACAGTGAGGGCTAGAGGCCCGGCTGCTAAGCAACGGCAGAGGGC
GGGAAGTTTGAACGTTCTGGACCCGCCCCGAAGGCGAATAGGCCAATCAGCATCCAGATTCTTC
AGCTACGGCAGTCCGCTTCTCCTCCTCGCCCTGTCGGATCTCTAGGCTGGATCCGGGCCTCTCC
AATCAATAGCGGCTAGGAGGGCGGGGGGCGTGCGCGCGCACCTGGCCCACGCGCCGGCGCTCTC
CTCCTGCAGGCTCGTGGCGGTTGATCAGCGGGACGCTCTCCGGCGTGTTGCGACTCAGAGCCTC
CAAGCTCATGGCCTCCTTAGGAGTGAACCCAAGCAGGACACCGCAGGGGCCGGGACCTGGGGCG
GCCTCCTCTGGCTTCTCCAGCCCGGCCCCAGTGCCGGGCCCCAGGGAGGCCGAGGAGGAGGAAG
TTGAGGAGGAGGAGCTGGCCGAGATCCATCTGTGTGTGCTGTGGAATTCAGGATACATGGGCAT
TGCCTACTATGATACTAGTGACTCCACTATCCACTTCATGCCAGATGCCCCAGACCACGAGAGC
CTCAAGCTTCTCCAGAGAGTTCTGGATGAGATCAATCCCCAGTCTGTTATTACGAGTGCCAAAC
AGGATGAGAATATGACTCGATTTCTGGGAAAGCTTGCCTCCCAGGAGCACAGACAGCCTAAAAG
ACCTGAAATCGTATTTTTGCCAAGTGTGGATTTTGGTCTGGAGATAAGCAAACAACGCCTCCTT
TCTGGAAACTACTCCTTCATCCCAGACTCCATGACTGCCACTGAGAAAATCCTCTTCCTCTCTT
CCATTATTCCCTTTGACTGCCTCCTCACAGTTCGAGCACTTGGAGGGCTGCTGAAGTTCCTGGG
TCGAAGAAGAATCGGGGTTGAACTGGAAGACTATAATGTCAGCGTCCCCATCCTGGGCTTTAAG
AAATTTATGTTGACTCATCTTGTGAACATAGATCAAGATACTTACAGTGTTCTACAGATTTTTA
AGAGTGAGTCTCACCCCTCAGCATACAAAGTGGCCAGTGGACTGAAGGAGGGGCTCAGCCTCTT
TGGAATCCTCAACAGATGCCGCTGTAAGTGGGGAGAGAAGCTGCTCAGACTATGGTTCACACGT
CCGACTCATGACCTGGGGGAACTCAATTCTCGTCTGGACGTCATTCAGTTTTTTCTGCTGCCCC
AGAATCTGGACATGGCTCAGATGCTGCATCGGCTCCTGGGTCACATCAAGAACGTGCCCCTGAT
TCTGAAACGCATGAAGTTGTCCCACACCAAGGTCAGCGACTGGCAGGTTCTCTACAAGACTGTG
TACGGTGCCCTGGGCCTGAGGGATGCCTGCCGCTCCCTGCCGCAGTCCATCCAGCTCTTTCGGG
ACATTGCCCAAGAGTTCTCTGATGACCTGCACCATATTGCCAGCCTCATTGGGAAAGTAGTGGA
CTTTGAGGGCAGCCTTGCTGAAAATCGCTTCACAGTCCTCCCCAACATAGATCCTGAAATTGAT
GAGAAAAAGCGAAGACTGATGGGACTTCCCAGTTTCCTTACTGAGGTTGCCCGCAAGGAGCTGG
AGAATCTGGACTCACGTATTCCTTCATGCAGTGTCATCTACATCCCTCTGATCGGCTTCCTTCT
TTCTATTCCTCGCCTGCCTTTCATGGTAGAGGCTAGTGACTTTGAGATTAATGGACTGGACTTC
ATGTTTCTCTCAGAGGAGAAGCTGCACTATCGTAGTGCCCGAACCAAGGAGCTGGATGCATTGC
TGGGGGACCTGCACTGTGAGATCCGGGACCAGGAGACGCTGCTGATGTACCAGCTGCAGTGCCA
GGTGCTGGCACGAGCAGCTGTCTTAACCCAAGTATTGGACCTTGCCTCCCGCCTGGACGTCCTG
CTGGCTCTTGCCAGTGCTGCCCGGGACTATGGCTACTCAAGGCCGCGTTACTCCCCTCAGGTCC
TTGGGGTACGAATCCAGAATGGCAGACATCCTCTGATGGAACTCTGTGCCCGAACTTTTGTGCC
CAACTCCACAGAATGTGGTGGGGACAAAGGAAGGGTCAAAGTCATCACTGGACCCAACTCATCA
GGGAAGAGCATATACCTCAAACAGGTAGGCTTGATCACATTCATGGCCCTGGTAGGCAGCTTTG
TGCCAGCAGAGGAGGCTGAAATTGGGGCAGTAGATGCCATCTTCACACGAATTCATAGCTGTGA
ATCCATCTCCCTTGGCCTCTCCACCTTCATCATCGACCTCAACCAGGTGGCAAAAGCAGTGAAC
AATGCCACTGCACAGTCGCTGGTCCTCATTGATGAATTTGGAAAGGGAACCAACACGGTGGATG
GGCTCGCGCTTCTGGCCGCTGTGCTCCGACACTGGCTGGCACGTGGAACCACATGCCCCCACAT
CTTTGTGGCCACCAACTTTCTGAGCCTTGTTCAGTTACAGCTGCTGCCACAAGGGCCCCTGGTG
CAGTATTTGACAATGGAGACCTGTGAGGATGGCAACGACCTTGTCTTCTTCTATCAGGTTTGCG
AAGGTGTTGCGAAGGCCAGCCATGCTTCCCACACAGCTGCCCAGGCTGGGCTTCCTGACAAGCT
TGTGGCTCGTGGCAAGGAGGTCTCAGACTTGATCCGCGGTGGAAAACCCATCAAGCCTGTCAAG
GATTTGCTAAAGAAGAACCAAATGGAAAATTGCCAGACATTAGTGGATAAGTTTATGAAACTGG
ATTTGGAAGATCCTAACCTGGACTTGAACGTTTTCATGAGCCAGGAAGTGCTGCCTGCTGCCAC
CAGCATCCTCTGAGAGTCCTTCCTGCGTCCTCCCCAGCCTCCTGAGACCCCAGTGGGCTGCCAT
GCCCCCTGTTTCCTTATCGCCTTCAGACCCAGAGTTTTTAGTTTCTCTAGAAATTTTGTTTCAT
ATTAGGAATAAAGTTTATTTTGAAGAAA

hide sequence

RefSeq Acc Id:

XM_038005920 ⟹ XP_037861848

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,960 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XM_038005921 ⟹ XP_037861849

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,960 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XM_038005922 ⟹ XP_037861850

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,960 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XM_038005923 ⟹ XP_037861851

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,960 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XM_038005924 ⟹ XP_037861852

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,956 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XM_038005925 ⟹ XP_037861853

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,653,469 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XM_038005926 ⟹ XP_037861854

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,919 - 31,675,016 (+)	NCBI

RefSeq Acc Id:

XR_005242988

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666044	31,652,960 - 31,675,016 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007971283	(Get FASTA)	NCBI Sequence Viewer
	XP_037861848	(Get FASTA)	NCBI Sequence Viewer
	XP_037861849	(Get FASTA)	NCBI Sequence Viewer
	XP_037861850	(Get FASTA)	NCBI Sequence Viewer
	XP_037861851	(Get FASTA)	NCBI Sequence Viewer
	XP_037861852	(Get FASTA)	NCBI Sequence Viewer
	XP_037861853	(Get FASTA)	NCBI Sequence Viewer
	XP_037861854	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004953.1

RefSeq Acc Id:	XP_007971283 ⟸ XM_007973092
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037861854 ⟸ XM_038005926
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_037861852 ⟸ XM_038005924
- Peptide Label:	isoform X5
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037861848 ⟸ XM_038005920
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037861850 ⟸ XM_038005922
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037861849 ⟸ XM_038005921
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037861851 ⟸ XM_038005923
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037861853 ⟸ XM_038005925
- Peptide Label:	isoform X5
- UniProtKB:	A0A0D9R8L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000004953 ⟸ ENSCSAT00000006757

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008713	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006757.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1420.10	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	DNA_mismatch_repair_Msh2	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_C	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_clamp	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_core	UniProtKB/TrEMBL
	DNA_mismatch_repair_MutS_sf	UniProtKB/TrEMBL
	MutS_family	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	MSH5	ENTREZGENE
PANTHER	MUTS PROTEIN HOMOLOG 5	UniProtKB/TrEMBL
	PTHR11361	UniProtKB/TrEMBL
Pfam	MutS_III	UniProtKB/TrEMBL
	MutS_IV	UniProtKB/TrEMBL
	MutS_V	UniProtKB/TrEMBL
PIRSF	MSH2	UniProtKB/TrEMBL
PROSITE	DNA_MISMATCH_REPAIR_2	UniProtKB/TrEMBL
SMART	MUTSac	UniProtKB/TrEMBL
	MUTSd	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48334	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0D9R8L4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM