SDCBP (syndecan binding protein) - Rat Genome Database

Name: SDCBP
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SDCBP (syndecan binding protein) Chlorocebus sabaeus

Analyze

Symbol:

SDCBP

Name:

syndecan binding protein

RGD ID:

18586705

Description:

ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); ephrin receptor binding (ortholog); frizzled binding (ortholog); INVOLVED IN negative regulation of receptor internalization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cell growth (ortholog); PARTICIPATES IN interleukin-5 signaling pathway; syndecan signaling pathway; ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN cytosol (ortholog); extracellular exosome (ortholog); interleukin-5 receptor complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC103236850; syntenin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	54,536,286 - 54,565,884 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,388 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

osteoarthritis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of receptor internalization (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of cell growth (ISO)

positive regulation of cell migration (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of epithelial to mesenchymal transition (ISO)

positive regulation of exosomal secretion (ISO)

positive regulation of extracellular exosome assembly (ISO)

positive regulation of phosphorylation (ISO)

positive regulation of transforming growth factor beta receptor signaling pathway (IEA)

presynapse assembly (ISO)

Ras protein signal transduction (ISO)

regulation of mitotic cell cycle (ISO)

Cellular Component

cytoplasm (IEA)

cytosol (ISO)

extracellular exosome (ISO)

interleukin-5 receptor complex (ISO)

membrane (IEA)

membrane raft (ISO)

nuclear membrane (ISO)

nucleoplasm (ISO)

plasma membrane (IEA)

presynapse (ISO)

Molecular Function

cell adhesion molecule binding (ISO)

ephrin receptor binding (ISO)

frizzled binding (ISO)

growth factor binding (ISO)

identical protein binding (ISO)

interleukin-5 receptor binding (ISO)

ionotropic glutamate receptor binding (ISO)

neurexin family protein binding (ISO)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein sequestering activity (ISO)

protein-containing complex binding (ISO)

syndecan binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

interleukin-5 signaling pathway (ISO)

syndecan signaling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SDCBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	54,536,286 - 54,565,884 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,388 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SDCBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	58,553,261 - 58,582,858 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	58,552,924 - 58,582,859 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	59,465,820 - 59,495,417 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	59,628,282 - 59,657,973 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	59,628,281 - 59,657,972	NCBI
Celera	8	55,458,752 - 55,488,443 (+)	NCBI		Celera
Cytogenetic Map	8	q12.1	NCBI
HuRef	8	54,952,903 - 54,982,593 (+)	NCBI		HuRef
CHM1_1	8	59,517,611 - 59,547,302 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	58,974,408 - 59,004,011 (+)	NCBI		T2T-CHM13v2.0

Sdcbp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	6,365,713 - 6,396,120 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	6,365,650 - 6,408,423 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	6,365,680 - 6,396,122 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	6,365,650 - 6,408,423 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	6,292,827 - 6,323,269 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	6,292,868 - 6,322,797 (+)	NCBI		MGSCv36	mm8
Celera	4	6,283,969 - 6,314,409 (+)	NCBI		Celera
Cytogenetic Map	4	A1	NCBI
cM Map	4	2.91	NCBI

Sdcbp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	24,245,279 - 24,314,712 (+)	NCBI		GRCr8
mRatBN7.2	5	19,473,499 - 19,517,188 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	19,489,961 - 19,527,572 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	21,697,118 - 21,724,119 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	23,288,429 - 23,315,152 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	23,068,735 - 23,095,458 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	19,471,664 - 19,498,499 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	19,471,664 - 19,498,485 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	24,256,110 - 24,283,037 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	19,822,440 - 19,849,223 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	19,822,439 - 19,849,220 (+)	NCBI
Celera	5	18,790,757 - 18,817,395 (+)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

Sdcbp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	17,089,232 - 17,113,484 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	17,093,930 - 17,113,491 (+)	NCBI	ChiLan1.0	ChiLan1.0

SDCBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	74,231,999 - 74,264,164 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	49,885,857 - 49,918,036 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	54,992,627 - 55,022,560 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	56,643,962 - 56,673,834 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	56,643,962 - 56,673,833 (+)	Ensembl	panpan1.1		panPan2

SDCBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	9,331,876 - 9,370,489 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	9,644,617 - 9,683,238 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	9,417,267 - 9,455,907 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	9,417,305 - 9,455,885 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	9,415,389 - 9,453,988 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	9,541,083 - 9,579,672 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	9,820,349 - 9,859,247 (+)	NCBI		UU_Cfam_GSD_1.0

Sdcbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	60,438,300 - 60,453,495 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	14,331,662 - 14,347,197 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936496	14,331,971 - 14,347,123 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SDCBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	74,295,922 - 74,341,085 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	74,295,941 - 74,357,720 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	81,090,105 - 81,122,727 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Sdcbp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	33,524,416 - 33,557,025 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	33,524,045 - 33,558,963 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	20	60
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008000708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008000709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008000710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008000711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008000712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008000708 ⟹ XP_007998899

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	54,536,286 - 54,565,884 (+)	NCBI
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,388 (-)	NCBI

Sequence:

show sequence

AAGGCGGGGGCGGTGCCATGACGCGCCTCGGGGGCGGTCCTCGGGCGCGCGCCGCTCTCTTACC
CTCGGGCCTCAGAAGTCCGTGCCAGTGACCGGAGGCGGTGGCGGCGAGCGGTTCCTTGTGGGCT
AGAAGAATCCTGCAAAAATGTCGCTCTATCCATCTCTTGAAGACTTGAAGGTAGACAAAGTAAT
TCAGGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGTCAGAAGCTTCTGCT
CCTATCTCTCAAGATGGAAATCTCTATCCCAAACTATATCCGGAGCTGTCTCAATACATGGGGC
TGAGTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGG
GCAGTTGCTAGCAAGACCTTCCAGTGTGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTT
GGAATTCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATG
GAAAAATTGGACTCAGGCTTAAATCAGTAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAA
TTCTCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTCCAGATCAATGGTGAAAAC
TGTGCAGGGTGGAGCTCAGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTA
CCATGACCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACA
TGTTGGTTTTATCTTTAAAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGA
AATGGTCTTCTCACAGAACATAACATCTGTGAAATCAATGGACAGAATGTCATTGGATTGAAGG
ACTCTCAAATTGCAGACATACTATCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGC
TTTTATCTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCAC
ACCATTCCTGAGGTTTAAAATTCACGGCACCATGGAAATGTAGCTGAACATCTCCAGTTTCCTT
GTTTGGCAACTTCTGTATTATGCACATGAAGCTTTCCCGGAGCCAGCAAGCATATGCTGCATGA
GGACCTTTCTATCTTACATTATGGCTGGGAATTTTACTATTTTCATCTGATACCTTGTTCAGAT
TTCAAAATAGTTGTAGCCTTATCCTGGTTTTACAGATGTGAAACTTTCAAGAGATTTACTGACT
TTCCTAGAATAGTTTCTCTACTGGAAACCTGATGCTTTTATAAGCCATTGTGATTAGGATGACT
GATACAGGCTTAGCTTTGTGTGAAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGTTC
ATATTACTTTAGTTCTATAGCATATTTGCATTTTTAACATGCTACCATAGTACATTTAGAATGA
TTGCCTTTGATTTTTTAAAAAAATTCTGTTTGTGTGTAAAATGCCAATTAAGAACACTGGTTTC
ATTCCATGTAAGCATTAAACAGTGTATGTAGGTTGCAAGAGATTGTGATGATTCTTAAATTTTA
ACTACCTTCATTTAATATGCTTAAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCC
AAAATATAATTATTGCTGCCTTTCTAAAACCCAAAATGTAGTTCTCTATTAACCTGAAATGTAC
ACTAGCCCAGAACAGTTTAATGGTACTTACTGAGCTATAGCATAGCTGCTTAGTTGTTTTTGAG
ATTTTTTAGTCAATGCATAATGGAAACTTCTTTCTTCTAAAAGTTGCCAGTACCACTTTGTGAG
AAGTGAATCACTATATATTTAATGTAAAAGTTATTACACTAAACAGGATAAACTTTTGACTCCT
CTTTTGTTCATTTGTGGATTAAGTGGTATAATACTTAATTTTGACATTTGACTCTTAGGATTAT
GTAACCTAGCTACTTTGGGATGGTCTTAGAATATTTTTCTGGTAACTTGTTCCATTTCCTGACT
CCTTGCAAACAAAATGATAGTGACATTTTATCCTGACTTTTTTCTTCTTTTTGGTTTATGTCTA
TTCTAATTAAATATGTATACATAAAGTTACATTTTA

hide sequence

RefSeq Acc Id:

XM_008000709 ⟹ XP_007998900

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	54,536,286 - 54,565,884 (+)	NCBI
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,343 (-)	NCBI

Sequence:

show sequence

AAGGCGGGGGCGGTGCCATGACGCGCCTCGGGGGCGGTCCTCGGGCGCGCGCCGCTCTCTTACC
CTCGGGCCTCAGAAGTCCGTGCCAGTGACCGGAGGCGGTGGCGGCGAGCGGTTCCTTGTGGGCT
AGAATCCTGCAAAAATGTCGCTCTATCCATCTCTTGAAGACTTGAAGGTAGACAAAGTAATTCA
GGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGTCAGAAGCTTCTGCTCCT
ATCTCTCAAGATGGAAATCTCTATCCCAAACTATATCCGGAGCTGTCTCAATACATGGGGCTGA
GTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGGCA
GTTGCTAGCAAGACCTTCCAGTGTGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGA
ATTCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAA
AAATTGGACTCAGGCTTAAATCAGTAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAATTC
TCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTCCAGATCAATGGTGAAAACTGT
GCAGGGTGGAGCTCAGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTACCA
TGACCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGT
TGGTTTTATCTTTAAAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAAT
GGTCTTCTCACAGAACATAACATCTGTGAAATCAATGGACAGAATGTCATTGGATTGAAGGACT
CTCAAATTGCAGACATACTATCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGCTTT
TATCTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACC
ATTCCTGAGGTTTAAAATTCACGGCACCATGGAAATGTAGCTGAACATCTCCAGTTTCCTTGTT
TGGCAACTTCTGTATTATGCACATGAAGCTTTCCCGGAGCCAGCAAGCATATGCTGCATGAGGA
CCTTTCTATCTTACATTATGGCTGGGAATTTTACTATTTTCATCTGATACCTTGTTCAGATTTC
AAAATAGTTGTAGCCTTATCCTGGTTTTACAGATGTGAAACTTTCAAGAGATTTACTGACTTTC
CTAGAATAGTTTCTCTACTGGAAACCTGATGCTTTTATAAGCCATTGTGATTAGGATGACTGAT
ACAGGCTTAGCTTTGTGTGAAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGTTCATA
TTACTTTAGTTCTATAGCATATTTGCATTTTTAACATGCTACCATAGTACATTTAGAATGATTG
CCTTTGATTTTTTAAAAAAATTCTGTTTGTGTGTAAAATGCCAATTAAGAACACTGGTTTCATT
CCATGTAAGCATTAAACAGTGTATGTAGGTTGCAAGAGATTGTGATGATTCTTAAATTTTAACT
ACCTTCATTTAATATGCTTAAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCCAAA
ATATAATTATTGCTGCCTTTCTAAAACCCAAAATGTAGTTCTCTATTAACCTGAAATGTACACT
AGCCCAGAACAGTTTAATGGTACTTACTGAGCTATAGCATAGCTGCTTAGTTGTTTTTGAGATT
TTTTAGTCAATGCATAATGGAAACTTCTTTCTTCTAAAAGTTGCCAGTACCACTTTGTGAGAAG
TGAATCACTATATATTTAATGTAAAAGTTATTACACTAAACAGGATAAACTTTTGACTCCTCTT
TTGTTCATTTGTGGATTAAGTGGTATAATACTTAATTTTGACATTTGACTCTTAGGATTATGTA
ACCTAGCTACTTTGGGATGGTCTTAGAATATTTTTCTGGTAACTTGTTCCATTTCCTGACTCCT
TGCAAACAAAATGATAGTGACATTTTATCCTGACTTTTTTCTTCTTTTTGGTTTATGTCTATTC
TAATTAAATATGTATACATAAAGTTACATTTTA

hide sequence

RefSeq Acc Id:

XM_008000710 ⟹ XP_007998901

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	54,536,496 - 54,565,666 (+)	NCBI
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,082 (-)	NCBI

Sequence:

show sequence

GGGCCACTTCACGGACTGCATCCAGGTCGCAGTCGTTTTCGGGAGGCGGCGGCGACGCCCTCTC
CTCAGGGTGTTCCGCGCACCGCCCTGCGCCCTGCTGGCTGGGGGAAGAATCCTGCAAAAATGTC
GCTCTATCCATCTCTTGAAGACTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTTTTCT
GCAAACCCTGCCAATCCAGCAATTTTGTCAGAAGCTTCTGCTCCTATCTCTCAAGATGGAAATC
TCTATCCCAAACTATATCCGGAGCTGTCTCAATACATGGGGCTGAGTTTAAATGAAGAAGAAAT
ACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGGCAGTTGCTAGCAAGACCTTCC
AGTGTGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGAAATTA
AGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAAAAATTGGACTCAGGCTTAA
ATCAGTAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAATTCTCCAGCCTCATTGGTTGGT
CTGAGATTTGGGGACCAAGTACTCCAGATCAATGGTGAAAACTGTGCAGGGTGGAGCTCAGATA
AAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTACCATGACCATTCGTGACAGGCC
CTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGGTTTTATCTTTAAAAAT
GGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAATGGTCTTCTCACAGAACATA
ACATCTGTGAAATCAATGGACAGAATGTCATTGGATTGAAGGACTCTCAAATTGCAGACATACT
ATCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGCTTTTATCTTTGAACATATTATT
AAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACCATTCCTGAGGTTTAAAATT
CACGGCACCATGGAAATGTAGCTGAACATCTCCAGTTTCCTTGTTTGGCAACTTCTGTATTATG
CACATGAAGCTTTCCCGGAGCCAGCAAGCATATGCTGCATGAGGACCTTTCTATCTTACATTAT
GGCTGGGAATTTTACTATTTTCATCTGATACCTTGTTCAGATTTCAAAATAGTTGTAGCCTTAT
CCTGGTTTTACAGATGTGAAACTTTCAAGAGATTTACTGACTTTCCTAGAATAGTTTCTCTACT
GGAAACCTGATGCTTTTATAAGCCATTGTGATTAGGATGACTGATACAGGCTTAGCTTTGTGTG
AAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGTTCATATTACTTTAGTTCTATAGCA
TATTTGCATTTTTAACATGCTACCATAGTACATTTAGAATGATTGCCTTTGATTTTTTAAAAAA
ATTCTGTTTGTGTGTAAAATGCCAATTAAGAACACTGGTTTCATTCCATGTAAGCATTAAACAG
TGTATGTAGGTTGCAAGAGATTGTGATGATTCTTAAATTTTAACTACCTTCATTTAATATGCTT
AAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCCAAAATATAATTATTGCTGCCTT
TCTAAAACCCAAAATGTAGTTCTCTATTAACCTGAAATGTACACTAGCCCAGAACAGTTTAATG
GTACTTACTGAGCTATAGCATAGCTGCTTAGTTGTTTTTGAGATTTTTTAGTCAATGCATAATG
GAAACTTCTTTCTTCTAAAAGTTGCCAGTACCACTTTGTGAGAAGTGAATCACTATATATTTAA
TGTAAAAGTTATTACACTAAACAGGATAAACTTTTGACTCCTCTTTTGTTCA

hide sequence

RefSeq Acc Id:

XM_008000711 ⟹ XP_007998902

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	54,536,286 - 54,565,884 (+)	NCBI
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,367 (-)	NCBI

Sequence:

show sequence

AAGGCGGGGGCGGTGCCATGACGCGCCTCGGGGGCGGTCCTCGGGCGCGCGCCGCTCTCTTACC
CTCGGGCCTCAGAAGTCCGTGCCAGTGACCGGAGGCGGTGGCGGCGAGCGGTTCCTTGTGGGCT
AGAAGAATCCTGCAAAAATGTCGCTCTATCCATCTCTTGAAGACTTGAAGGTAGACAAAGTAAT
TCAGGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGTCAGAAGCTTCTGCT
CCTATCTCTCAAGATGGAAATCTCTATCCCAAACTATATCCGGAGCTGTCTCAATACATGGGGC
TGAGTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGG
GTTGCTAGCAAGACCTTCCAGTGTGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGA
ATTCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAA
AAATTGGACTCAGGCTTAAATCAGTAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAATTC
TCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTCCAGATCAATGGTGAAAACTGT
GCAGGGTGGAGCTCAGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTACCA
TGACCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGT
TGGTTTTATCTTTAAAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAAT
GGTCTTCTCACAGAACATAACATCTGTGAAATCAATGGACAGAATGTCATTGGATTGAAGGACT
CTCAAATTGCAGACATACTATCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGCTTT
TATCTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACC
ATTCCTGAGGTTTAAAATTCACGGCACCATGGAAATGTAGCTGAACATCTCCAGTTTCCTTGTT
TGGCAACTTCTGTATTATGCACATGAAGCTTTCCCGGAGCCAGCAAGCATATGCTGCATGAGGA
CCTTTCTATCTTACATTATGGCTGGGAATTTTACTATTTTCATCTGATACCTTGTTCAGATTTC
AAAATAGTTGTAGCCTTATCCTGGTTTTACAGATGTGAAACTTTCAAGAGATTTACTGACTTTC
CTAGAATAGTTTCTCTACTGGAAACCTGATGCTTTTATAAGCCATTGTGATTAGGATGACTGAT
ACAGGCTTAGCTTTGTGTGAAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGTTCATA
TTACTTTAGTTCTATAGCATATTTGCATTTTTAACATGCTACCATAGTACATTTAGAATGATTG
CCTTTGATTTTTTAAAAAAATTCTGTTTGTGTGTAAAATGCCAATTAAGAACACTGGTTTCATT
CCATGTAAGCATTAAACAGTGTATGTAGGTTGCAAGAGATTGTGATGATTCTTAAATTTTAACT
ACCTTCATTTAATATGCTTAAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCCAAA
ATATAATTATTGCTGCCTTTCTAAAACCCAAAATGTAGTTCTCTATTAACCTGAAATGTACACT
AGCCCAGAACAGTTTAATGGTACTTACTGAGCTATAGCATAGCTGCTTAGTTGTTTTTGAGATT
TTTTAGTCAATGCATAATGGAAACTTCTTTCTTCTAAAAGTTGCCAGTACCACTTTGTGAGAAG
TGAATCACTATATATTTAATGTAAAAGTTATTACACTAAACAGGATAAACTTTTGACTCCTCTT
TTGTTCATTTGTGGATTAAGTGGTATAATACTTAATTTTGACATTTGACTCTTAGGATTATGTA
ACCTAGCTACTTTGGGATGGTCTTAGAATATTTTTCTGGTAACTTGTTCCATTTCCTGACTCCT
TGCAAACAAAATGATAGTGACATTTTATCCTGACTTTTTTCTTCTTTTTGGTTTATGTCTATTC
TAATTAAATATGTATACATAAAGTTACATTTTA

hide sequence

RefSeq Acc Id:

XM_008000712 ⟹ XP_007998903

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	54,536,286 - 54,565,884 (+)	NCBI
Vero_WHO_p1.0	NW_023666039	87,157,660 - 87,187,349 (-)	NCBI

Sequence:

show sequence

AAGGCGGGGGCGGTGCCATGACGCGCCTCGGGGGCGGTCCTCGGGCGCGCGCCGCTCTCTTACC
CTCGGGCCTCAGAAGTCCGTGCCAGTGACCGGAGGCGGTGGCGGCGAGCGGTTCCTTGTGGGCT
AGAATCCTGCAAAAATGTCGCTCTATCCATCTCTTGAAGACTTGAAGGTAGACAAAGTAATTCA
GGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGTCAGAAGCTTCTGCTCCT
ATCTCTCAAGATGGAAATCTCTATCCCAAACTATATCCGGAGCTGTCTCAATACATGGGGCTGA
GTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGGTT
GCTAGCAAGACCTTCCAGTGTGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGAATT
CGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAAAAA
TTGGACTCAGGCTTAAATCAGTAGATAATGGTATATTTGTTCAGCTAGTCCAGGCTAATTCTCC
AGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTCCAGATCAATGGTGAAAACTGTGCA
GGGTGGAGCTCAGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTACCATGA
CCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGG
TTTTATCTTTAAAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAATGGT
CTTCTCACAGAACATAACATCTGTGAAATCAATGGACAGAATGTCATTGGATTGAAGGACTCTC
AAATTGCAGACATACTATCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGCTTTTAT
CTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACCATT
CCTGAGGTTTAAAATTCACGGCACCATGGAAATGTAGCTGAACATCTCCAGTTTCCTTGTTTGG
CAACTTCTGTATTATGCACATGAAGCTTTCCCGGAGCCAGCAAGCATATGCTGCATGAGGACCT
TTCTATCTTACATTATGGCTGGGAATTTTACTATTTTCATCTGATACCTTGTTCAGATTTCAAA
ATAGTTGTAGCCTTATCCTGGTTTTACAGATGTGAAACTTTCAAGAGATTTACTGACTTTCCTA
GAATAGTTTCTCTACTGGAAACCTGATGCTTTTATAAGCCATTGTGATTAGGATGACTGATACA
GGCTTAGCTTTGTGTGAAAACCAGTCACCTTTCTCCTAGGTAATGAGTAGTGCTGTTCATATTA
CTTTAGTTCTATAGCATATTTGCATTTTTAACATGCTACCATAGTACATTTAGAATGATTGCCT
TTGATTTTTTAAAAAAATTCTGTTTGTGTGTAAAATGCCAATTAAGAACACTGGTTTCATTCCA
TGTAAGCATTAAACAGTGTATGTAGGTTGCAAGAGATTGTGATGATTCTTAAATTTTAACTACC
TTCATTTAATATGCTTAAACTGTCGCCTTAACTATGTTAAGCATCTAGACTAAAAGCCAAAATA
TAATTATTGCTGCCTTTCTAAAACCCAAAATGTAGTTCTCTATTAACCTGAAATGTACACTAGC
CCAGAACAGTTTAATGGTACTTACTGAGCTATAGCATAGCTGCTTAGTTGTTTTTGAGATTTTT
TAGTCAATGCATAATGGAAACTTCTTTCTTCTAAAAGTTGCCAGTACCACTTTGTGAGAAGTGA
ATCACTATATATTTAATGTAAAAGTTATTACACTAAACAGGATAAACTTTTGACTCCTCTTTTG
TTCATTTGTGGATTAAGTGGTATAATACTTAATTTTGACATTTGACTCTTAGGATTATGTAACC
TAGCTACTTTGGGATGGTCTTAGAATATTTTTCTGGTAACTTGTTCCATTTCCTGACTCCTTGC
AAACAAAATGATAGTGACATTTTATCCTGACTTTTTTCTTCTTTTTGGTTTATGTCTATTCTAA
TTAAATATGTATACATAAAGTTACATTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007998899	(Get FASTA)	NCBI Sequence Viewer
	XP_007998900	(Get FASTA)	NCBI Sequence Viewer
	XP_007998901	(Get FASTA)	NCBI Sequence Viewer
	XP_007998902	(Get FASTA)	NCBI Sequence Viewer
	XP_007998903	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010642.1
	ENSCSAP00000018195.1

RefSeq Acc Id:	XP_007998899 ⟸ XM_008000708
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007998902 ⟸ XM_008000711
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9SBF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007998900 ⟸ XM_008000709
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007998903 ⟸ XM_008000712
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9SBF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007998901 ⟸ XM_008000710
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBF6 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014518	ENTREZGENE, UniProtKB/TrEMBL
	ENSCSAG00000018673	UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012612.1	UniProtKB/TrEMBL
	ENSCSAT00000018763.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
InterPro	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
NCBI Gene	SDCBP	ENTREZGENE
PANTHER	PTHR12345:SF10	UniProtKB/TrEMBL
	SYNTENIN RELATED	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PROSITE	PDZ	UniProtKB/TrEMBL
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50156	UniProtKB/TrEMBL
UniProt	A0A0D9RPV3_CHLSB	UniProtKB/TrEMBL
	A0A0D9SBF6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-08-09	SDCBP	syndecan binding protein	LOC103236850	syndecan binding protein	Symbol and/or name change	5135510	APPROVED
2020-12-08	LOC103236850	syndecan binding protein	SDCBP	syndecan binding protein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)