COLEC12 (collectin subfamily member 12)

Gene: COLEC12 (collectin subfamily member 12) Chlorocebus sabaeus

Analyze

Symbol:

COLEC12

Name:

collectin subfamily member 12

RGD ID:

18584615

Description:

ENCODES a protein that exhibits carbohydrate binding (inferred); low-density lipoprotein particle binding (inferred); pattern recognition receptor activity (inferred); INVOLVED IN cellular response to exogenous dsRNA (ortholog); immune response (ortholog); plasma membrane raft organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN collagen trimer (inferred); collagen-containing extracellular matrix (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collectin-12

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	59,701,131 - 59,884,445 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	59,699,348 - 59,884,461 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	34,490,498 - 34,675,112 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

substance-related disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to exogenous dsRNA (IEA,ISO)

defense response to bacterium (IEA)

immune response (IEA,ISO)

innate immune response (IEA)

phagocytosis, recognition (IEA)

plasma membrane raft organization (IEA,ISO)

toll-like receptor 3 signaling pathway (IEA)

Cellular Component

collagen trimer (IEA)

collagen-containing extracellular matrix (IEA)

membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

low-density lipoprotein particle binding (IEA)

pattern recognition receptor activity (IEA)

protein binding (ISO)

scavenger receptor activity (IEA)

signaling receptor activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

COLEC12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	59,701,131 - 59,884,445 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	59,699,348 - 59,884,461 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	34,490,498 - 34,675,112 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

COLEC12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	316,737 - 500,701 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	316,737 - 500,722 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	316,737 - 500,701 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	309,356 - 490,685 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	309,355 - 490,685	NCBI
Celera	18	194,506 - 375,871 (-)	NCBI		Celera
Cytogenetic Map	18	p11.32	NCBI
HuRef	18	279,136 - 440,551 (-)	NCBI		HuRef
CHM1_1	18	318,475 - 499,849 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	470,846 - 654,740 (-)	NCBI		T2T-CHM13v2.0

Colec12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	9,707,648 - 9,877,995 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	9,707,595 - 9,882,644 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	9,707,648 - 9,877,995 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	9,707,595 - 9,882,644 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	9,707,646 - 9,877,993 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	9,707,675 - 9,877,990 (+)	NCBI		MGSCv36	mm8
Celera	18	9,737,717 - 9,907,507 (+)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	4.91	NCBI

Colec12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	1,005,787 - 1,193,455 (+)	NCBI		GRCr8
mRatBN7.2	18	732,950 - 920,620 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	732,950 - 920,618 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	960,785 - 1,142,019 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	1,748,614 - 1,929,841 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	962,684 - 1,143,918 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	867,048 - 1,054,047 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	867,048 - 1,052,606 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	910,945 - 1,096,505 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	996,297 - 1,188,288 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	1,162,605 - 1,163,261 (+)	NCBI
Celera	18	629,852 - 811,837 (+)	NCBI		Celera
Cytogenetic Map	18	p13	NCBI

Colec12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	9,468,421 - 9,614,286 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	9,445,419 - 9,614,956 (+)	NCBI	ChiLan1.0	ChiLan1.0

COLEC12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	37,982,247 - 38,178,247 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	23,674,649 - 23,871,759 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	13,819,575 - 14,001,383 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	17,461,650 - 17,641,404 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	17,461,678 - 17,640,721 (+)	Ensembl	panpan1.1		panPan2

COLEC12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	67,192,191 - 67,373,524 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	67,193,626 - 67,372,755 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	66,645,862 - 66,826,568 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	67,257,518 - 67,438,465 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	67,258,955 - 67,438,386 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	66,935,179 - 67,115,867 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	66,946,113 - 67,126,853 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	67,248,426 - 67,429,208 (-)	NCBI		UU_Cfam_GSD_1.0

Colec12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	63,465,877 - 63,646,996 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936550	169,084 - 350,501 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936550	169,084 - 350,209 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COLEC12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	105,808,221 - 106,007,730 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	105,808,157 - 106,000,197 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Colec12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	10,859,205 - 11,013,175 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624770	10,860,097 - 11,136,478 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium			7
Low	36	18	53
Below cutoff		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007974490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007974491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037982459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015722 ⟹ ENSCSAP00000013653

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	18	59,699,348 - 59,884,461 (-)	Ensembl

RefSeq Acc Id:

XM_007974490 ⟹ XP_007972681

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	18	59,701,133 - 59,884,445 (-)	NCBI
Vero_WHO_p1.0	NW_023666050	34,491,653 - 34,675,112 (-)	NCBI

Sequence:

show sequence

GGCGCGCGCGGCAGCCCCGCGGCAGCAGAGCGCCAAGCCGGGAGCGTGGGGAGCGCGGGCCGGC
GGCGGCGAGGGAGGACTGGGGCGCAGACGGCCGGCGCGCGGCGCGGCTACCATGGGCGTGCAGT
GAGCGGCCGCTCAGGACGACTTCCTCGGCTGCGCGGCGCTCGCGCGGAGCTCCCTGGCTGGCGG
TGCGTCCCCTCGGTCACCATGAAAGACGACTTCGCAGAGGAGGAGGAGGTGCAATCCTTCGGTT
ACAAGCGGTTTGGTATTCAGGAAGGAACACAATGTACCAAATGTAAAAATAACTGGGCGCTGAA
GTTCTCTATCATATTATTATACATTTTGTGTGCCTTGCTAACAATCACAGTAGCCATTTTGGGA
TATAAAGTTGTAGAGAAAATGGACAATGTCACAGGCGGCATGGAGACATCTCGCCAAACCTATG
ATGACAAGCTCACAGCAGTGGAAAGTGACCTGAAGAAATTAGGTGACCAAACTGGGAAGAAAGC
TATCAGCACCAACTCAGAACTCTCCACCTTCAGATCAGACATTCTAGATCTCCGTCAGCAACTT
CGTGAGATTACAGAAAAAACCAGCAAGAACAAGGATACGCTGGAGAAGTTACAGGCGAGCGGGG
ATGCACTGGTGGACAGGCAGAGTCAACTGAAAGAAACTTTGGAGAATAATTCTTTCCTCATCAC
CACTGTGAACAAAACCCTCCAGGCGTATAATGGCTATGTCACAAATCTGCAGCAAGATACCAGC
GTGCTCCAGGGCAATCTGCAGAATCAAATGTATTCTCATAACGTGGTCATCATGAACCTTAACA
ACCTGAACCTGACCCAGGTACAGCAGAGGAACCTCATCACGAATCTGCAGCGGTCTGTGGATGA
CACAAGCCAGGCTATCCAGCGAATCAAGAACGACTTTCAAAATCTGCAGCAGGTTTTTCTTCAA
GCCAAGAAGGACACGGATTGGCTGAAGGAGAAAGTGCAGAGCTTGCAGACGCTGGCTGCCAACA
ACTCTGCTTTGGCCAAAGCCAACAATGACACCCTGGAGGATATGAACAGCCAGCTCAACTCATT
CACAGGTCAGATGGAGAACATCACCACTATCTCTCAAGCCAATGAGCAGAACCTGAAAGACCTG
CAGGACTTACACAAGGATGCAGAGAATAGAACAGCCATCAAGTTCAACCAACTGGAGGAACGCT
TCCAACTCTTTGAGACAGATATTGTGAACATCATTAGCAATATCAGTTACACAGCCCACCACCT
GCGGACGCTGACCAGCAATCTAAATGAAGTCAGGACCACTTGCACAGATACCCTAACCAAACAC
ACGGATGATCTGACCTCCTTGAATAATACCCTGGCCAACATCCGTTTGGATTCTGTTTCTCTCA
GGATGCAACAAGATTTGATGAGGTCGAGGTTAGACACTGAAGTAGCCAACTTATCAGTGATTAT
GGAAGAAATGAAGCTAGTAGACTCCAAGCATGGTCAGCTCATCAAGAATTTTACAATACTGCAA
GGTCCACCGGGCCCGAGGGGTCCAAAAGGTGACAGAGGATCCCAGGGACCCCCTGGTCCAACTG
GCAACAAGGGACAGAAAGGAGAGAAGGGGGAGCCTGGACCGCCTGGCCCTGCGGGTGAGAGAGG
CCCAGTTGGACCCGCAGGTCCCCCCGGAGAACGTGGCGGCAAAGGATCTAAGGGCTCCCAGGGC
CCCAAAGGTTCCCGCGGTTCCCCCGGGAAGCCCGGCCCTCAGGGCCCCAGTGGGGACCCAGGCC
CCCCAGGCCCTCCAGGCAAAGAAGGACTCCCTGGCCCCCAGGGCCCTCCTGGCTTCCAGGGACT
GCAGGGCACTGTGGGGGAGCCTGGGGTTCCTGGACCTCGGGGACTGCCAGGCTTGCCTGGGGTA
CCAGGCATGCCAGGCCCCAAGGGCCCCCCCGGCCCTCCCGGCCCATCAGGAGCAGTGGTGCCCC
TGGCCCTGCAGAATGAACCAACCCCGGCACCAGAGGACAATGGCTGCCCGCCTCACTGGAAGAA
CTTCACAGACAAATGCTACTATTTTTCGATTGAGAAAGAAATTTTTGAGGAAGCAAAGCTTTTC
TGTGAAGACAAGTCTTCCCATCTCGTTTTCATAAACACTAGGGAGGAACAGCAATGGATAAAAA
AACAGCTGGTAGGGAGGGAGAGCCACTGGATCGGCCTCACAGACTCAGAGCATGAAAATGAATG
GAAGTGGCTGGATGGGACATCTCCAGACTACAAAAATTGGAAAGCTGGACAGCCGGATAACTGG
GGTCATGGCCACGGGCCAGGAGAAGACTGTGCTGGGTTGATTTATGCTGGGCAGTGGAACGATT
TCCAATGTGAAGACGTCAATAACTTCATTTGCGAAAAAGACAGAGAGACAGTACTGTCATCTGC
ATTATAATGGACTGTGATGGAATCACATGAGCAAATTTTCAGCTCTCAAAGGCAAAGGACACTC
CTTTCTAATTGCGTCACCTTCTTATCAGATTGAAAAAAAAAAAGCACTGAAAACCAATTACTGA
AAAAAAATTGACAGCTAGTTTTTACCATCCATCATTACCCAAAGACTTGGGAACTAAAATGTTC
CCCAGGGTGATATGCTGAATTCCATTGTGCACATGGACTGAATCACATAGATTTTCCTCCGTCA
GTAATCATGCAATTATTCAAATTATATCTTCCGAAGTATGGAACACTACAATCAGAAAAAGGCT
ATCATTGATTGTTGAGTTATAGGAAGAACTTAAGCATATACTGTGTAAACAGTACCATACGTTT
CTAAAAATCCCAAGTGTAGGAAAAATATGCAGACATACAGATATATAGGCCAACTCTTAGTAAT
AATATGAAATATACTTAAAGAGCTTTTAAAACTTTGTATTTTTGTACAAAATATTTGCCTTTTA
CAATTTTTTTCCTTTTTTTTTTTTTTTTGTCATTTTACTGACATAATACATGGAGCCAAAGAAA
ACAATAATGGTACTAATAAAAACTCCTAGGGTTTCCTGTCAGATTTAATTCTACTCAGTGGCAA
AGAATTTTTTCAATTGTGGTTTAAAAAAAAAATTAAATATATATGTATATATA

hide sequence

RefSeq Acc Id:

XM_007974491 ⟹ XP_007972682

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	18	59,701,131 - 59,751,290 (-)	NCBI
Vero_WHO_p1.0	NW_023666050	34,492,276 - 34,654,494 (-)	NCBI

Sequence:

show sequence

TTTTCTGATTCTCTGCTCTAAGAGCTGAAGTTCAAAAGGCCTTCTACCTATAGAATGGCTCAGC
TGGTAGAATCTGATTTTTTCCATTTTGATTTCTAAGTCTGCTGCTGTTACAGTCATTTATGCAT
CTCATGAATGTAATGAAGTGTTGCTTTCCTCTGAACTCTTATTTTTTTTCTGCCTGGTAGGTGG
GGTTTTAATCCCTGCATGATTTTGAGAGGTAAACAGAATATCTTCCAGATGGGGGTTGTTCTTC
AAAGTCCTTTCCTCGGTGGTGATTCCTCCATCTGAATCCAAATGTGTTCTCCACAGCTGCCTGT
CCTAGGCTGATCCACCAGGGCTCTACTTCTTGACTTTGCCATGCTAATGTCAGGTATTCAGGAA
GGAACACAATGTACCAAATGTAAAAATAACTGGGCGCTGAAGTTCTCTATCATATTATTATACA
TTTTGTGTGCCTTGCTAACAATCACAGTAGCCATTTTGGGATATAAAGTTGTAGAGAAAATGGA
CAATGTCACAGGCGGCATGGAGACATCTCGCCAAACCTATGATGACAAGCTCACAGCAGTGGAA
AGTGACCTGAAGAAATTAGGTGACCAAACTGGGAAGAAAGCTATCAGCACCAACTCAGAACTCT
CCACCTTCAGATCAGACATTCTAGATCTCCGTCAGCAACTTCGTGAGATTACAGAAAAAACCAG
CAAGAACAAGGATACGCTGGAGAAGTTACAGGCGAGCGGGGATGCACTGGTGGACAGGCAGAGT
CAACTGAAAGAAACTTTGGAGAATAATTCTTTCCTCATCACCACTGTGAACAAAACCCTCCAGG
CGTATAATGGCTATGTCACAAATCTGCAGCAAGATACCAGCGTGCTCCAGGGCAATCTGCAGAA
TCAAATGTATTCTCATAACGTGGTCATCATGAACCTTAACAACCTGAACCTGACCCAGGTACAG
CAGAGGAACCTCATCACGAATCTGCAGCGGTCTGTGGATGACACAAGCCAGGCTATCCAGCGAA
TCAAGAACGACTTTCAAAATCTGCAGCAGGTTTTTCTTCAAGCCAAGAAGGACACGGATTGGCT
GAAGGAGAAAGTGCAGAGCTTGCAGACGCTGGCTGCCAACAACTCTGCTTTGGCCAAAGCCAAC
AATGACACCCTGGAGGATATGAACAGCCAGCTCAACTCATTCACAGGTCAGATGGAGAACATCA
CCACTATCTCTCAAGCCAATGAGCAGAACCTGAAAGACCTGCAGGACTTACACAAGGATGCAGA
GAATAGAACAGCCATCAAGTTCAACCAACTGGAGGAACGCTTCCAACTCTTTGAGACAGATATT
GTGAACATCATTAGCAATATCAGTTACACAGCCCACCACCTGCGGACGCTGACCAGCAATCTAA
ATGAAGTCAGGACCACTTGCACAGATACCCTAACCAAACACACGGATGATCTGACCTCCTTGAA
TAATACCCTGGCCAACATCCGTTTGGATTCTGTTTCTCTCAGGATGCAACAAGATTTGATGAGG
TCGAGGTTAGACACTGAAGTAGCCAACTTATCAGTGATTATGGAAGAAATGAAGCTAGTAGACT
CCAAGCATGGTCAGCTCATCAAGAATTTTACAATACTGCAAGGTCCACCGGGCCCGAGGGGTCC
AAAAGGTGACAGAGGATCCCAGGGACCCCCTGGTCCAACTGGCAACAAGGGACAGAAAGGAGAG
AAGGGGGAGCCTGGACCGCCTGGCCCTGCGGGTGAGAGAGGCCCAGTTGGACCCGCAGGTCCCC
CCGGAGAACGTGGCGGCAAAGGATCTAAGGGCTCCCAGGGCCCCAAAGGTTCCCGCGGTTCCCC
CGGGAAGCCCGGCCCTCAGGGCCCCAGTGGGGACCCAGGCCCCCCAGGCCCTCCAGGCAAAGAA
GGACTCCCTGGCCCCCAGGGCCCTCCTGGCTTCCAGGGACTGCAGGGCACTGTGGGGGAGCCTG
GGGTTCCTGGACCTCGGGGACTGCCAGGCTTGCCTGGGGTACCAGGCATGCCAGGCCCCAAGGG
CCCCCCCGGCCCTCCCGGCCCATCAGGAGCAGTGGTGCCCCTGGCCCTGCAGAATGAACCAACC
CCGGCACCAGAGGACAATGGCTGCCCGCCTCACTGGAAGAACTTCACAGACAAATGCTACTATT
TTTCGATTGAGAAAGAAATTTTTGAGGAAGCAAAGCTTTTCTGTGAAGACAAGTCTTCCCATCT
CGTTTTCATAAACACTAGGGAGGAACAGCAATGGATAAAAAAACAGCTGGTAGGGAGGGAGAGC
CACTGGATCGGCCTCACAGACTCAGAGCATGAAAATGAATGGAAGTGGCTGGATGGGACATCTC
CAGACTACAAAAATTGGAAAGCTGGACAGCCGGATAACTGGGGTCATGGCCACGGGCCAGGAGA
AGACTGTGCTGGGTTGATTTATGCTGGGCAGTGGAACGATTTCCAATGTGAAGACGTCAATAAC
TTCATTTGCGAAAAAGACAGAGAGACAGTACTGTCATCTGCATTATAATGGACTGTGATGGAAT
CACATGAGCAAATTTTCAGCTCTCAAAGGCAAAGGACACTCCTTTCTAATTGCGTCACCTTCTT
ATCAGATTGAAAAAAAAAAAGCACTGAAAACCAATTACTGAAAAAAAATTGACAGCTAGTTTTT
ACCATCCATCATTACCCAAAGACTTGGGAACTAAAATGTTCCCCAGGGTGATATGCTGAATTCC
ATTGTGCACATGGACTGAATCACATAGATTTTCCTCCGTCAGTAATCATGCAATTATTCAAATT
ATATCTTCCGAAGTATGGAACACTACAATCAGAAAAAGGCTATCATTGATTGTTGAGTTATAGG
AAGAACTTAAGCATATACTGTGTAAACAGTACCATACGTTTCTAAAAATCCCAAGTGTAGGAAA
AATATGCAGACATACAGATATATAGGCCAACTCTTAGTAATAATATGAAATATACTTAAAGAGC
TTTTAAAACTTTGTATTTTTGTACAAAATATTTGCCTTTTACAATTTTTTTCCTTTTTTTTTTT
TTTTTGTCATTTTACTGACATAATACATGGAGCCAAAGAAAACAATAATGGTACTAATAAAAAC
TCCTAGGGTTTCCTGTCAGATTTAATTCTACTCAGTGGCAAAGAATTTTTTCAATTGTGGTTTA
AAAAAAAAATTAAATATATATGTATATATATA

hide sequence

RefSeq Acc Id:

XM_037982459 ⟹ XP_037838387

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666050	34,490,498 - 34,547,723 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007972681	(Get FASTA)	NCBI Sequence Viewer
	XP_007972682	(Get FASTA)	NCBI Sequence Viewer
	XP_037838387	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013653
	ENSCSAP00000013653.1

RefSeq Acc Id:	XP_007972682 ⟸ XM_007974491
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007972681 ⟸ XM_007974490
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RYG4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000013653 ⟸ ENSCSAT00000015722

RefSeq Acc Id:	XP_037838387 ⟸ XM_037982459
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017628	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015722.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/TrEMBL
	CD209-like_CTLD	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
KEGG Report	csab:103222674	UniProtKB/TrEMBL
NCBI Gene	COLEC12	ENTREZGENE
PANTHER	COLLECTIN-12	UniProtKB/TrEMBL
	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	Lectin_C	UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_1	UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56436	UniProtKB/TrEMBL
UniProt	A0A0D9RYG4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD