MALSU1 (mitochondrial assembly of ribosomal large subunit 1) - Rat Genome Database

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Gene: MALSU1 (mitochondrial assembly of ribosomal large subunit 1) Chlorocebus sabaeus
Analyze
Symbol: MALSU1
Name: mitochondrial assembly of ribosomal large subunit 1
RGD ID: 18578270
Description: ENCODES a protein that exhibits mitochondrial large ribosomal subunit binding (inferred); ribosomal large subunit binding (inferred); INVOLVED IN negative regulation of mitochondrial translation (inferred); negative regulation of ribosome biogenesis (inferred); negative regulation of translation (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial assembly of ribosomal large subunit protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12134,999,587 - 35,011,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2134,996,592 - 35,011,019 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604269,596,354 - 69,607,581 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MALSU1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12134,999,587 - 35,011,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2134,996,592 - 35,011,019 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604269,596,354 - 69,607,581 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MALSU1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38723,299,339 - 23,311,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl723,298,739 - 23,311,729 (+)EnsemblGRCh38hg38GRCh38
GRCh37723,338,958 - 23,351,348 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36723,305,465 - 23,315,705 (+)NCBINCBI36Build 36hg18NCBI36
Build 34723,112,179 - 23,122,420NCBI
Celera723,325,228 - 23,335,467 (+)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef723,221,210 - 23,231,478 (+)NCBIHuRef
CHM1_1723,339,525 - 23,349,765 (+)NCBICHM1_1
T2T-CHM13v2.0723,435,779 - 23,448,169 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2723,390,818 - 23,401,057 (+)NCBI
Malsu1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39649,050,729 - 49,116,078 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl649,050,729 - 49,063,685 (+)EnsemblGRCm39 Ensembl
GRCm38649,073,795 - 49,139,144 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl649,073,795 - 49,086,751 (+)EnsemblGRCm38mm10GRCm38
MGSCv37649,023,794 - 49,034,716 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera649,583,901 - 49,594,818 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.82NCBI
Malsu1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8479,381,963 - 79,390,786 (+)NCBIGRCr8
mRatBN7.2478,051,090 - 78,059,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl478,051,059 - 78,059,905 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx483,258,566 - 83,267,381 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0479,034,044 - 79,042,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0477,474,346 - 77,483,161 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0478,735,279 - 78,744,102 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,735,279 - 78,744,102 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04143,423,969 - 143,432,792 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4477,202,217 - 77,211,040 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1477,478,355 - 77,487,162 (+)NCBI
Celera472,986,964 - 72,995,787 (+)NCBICelera
Cytogenetic Map4q24NCBI
Malsu1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541025,594,609 - 25,604,639 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541025,594,570 - 25,613,286 (+)NCBIChiLan1.0ChiLan1.0
MALSU1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2628,163,479 - 28,175,899 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1776,489,849 - 76,500,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0723,983,904 - 23,994,196 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1723,591,999 - 23,603,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl723,591,478 - 23,602,262 (+)Ensemblpanpan1.1panPan2
MALSU1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11436,959,667 - 36,968,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1436,959,695 - 36,968,348 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1436,500,350 - 36,509,579 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01436,890,135 - 36,899,367 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1436,889,700 - 36,898,809 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11437,005,202 - 37,014,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01436,701,475 - 36,710,694 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01437,038,564 - 37,047,785 (+)NCBIUU_Cfam_GSD_1.0
Malsu1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511881,234,965 - 81,362,782 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936478446,650 - 576,024 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936478446,691 - 456,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MALSU1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl992,088,425 - 92,104,643 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1992,088,409 - 92,104,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Malsu1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247397,319,632 - 7,330,290 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247397,320,279 - 7,330,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 4 32
Low 16 28
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007981887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000012061   ⟹   ENSCSAP00000010111
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2134,996,592 - 35,011,019 (-)Ensembl
RefSeq Acc Id: XM_007981887   ⟹   XP_007980078
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12134,999,587 - 35,011,064 (-)NCBI
Vero_WHO_p1.0NW_02366604269,596,354 - 69,607,581 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007980078 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010111.1
Reference Protein Sequences
RefSeq Acc Id: XP_007980078   ⟸   XM_007981887
- UniProtKB: A0A0D9RNC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010111   ⟸   ENSCSAT00000012061


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013969 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012061.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.460.10 UniProtKB/TrEMBL
InterPro Iojap/RsfS/C7orf30 UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
NCBI Gene MALSU1 ENTREZGENE
PANTHER MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1 UniProtKB/TrEMBL
  PTHR21043 UniProtKB/TrEMBL
Pfam RsfS UniProtKB/TrEMBL
Superfamily-SCOP SSF81301 UniProtKB/TrEMBL
UniProt A0A0D9RNC2 ENTREZGENE, UniProtKB/TrEMBL