ADGRV1 (adhesion G protein-coupled receptor V1) - Rat Genome Database

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Gene: ADGRV1 (adhesion G protein-coupled receptor V1) Chlorocebus sabaeus
Analyze
Symbol: ADGRV1
Name: adhesion G protein-coupled receptor V1
RGD ID: 18574933
Description: ENCODES a protein that exhibits myosin binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); autosomal recessive nonsyndromic deafness (ortholog); beta-mannosidosis (ortholog); FOUND IN periciliary membrane compartment (ortholog); perinuclear region of cytoplasm (ortholog); photoreceptor connecting cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adhesion G-protein coupled receptor V1; G-protein coupled receptor 98
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1484,498,630 - 85,082,813 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl484,498,573 - 85,083,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604933,558,202 - 34,144,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADGRV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1484,498,630 - 85,082,813 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl484,498,573 - 85,083,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604933,558,202 - 34,144,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ADGRV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38590,558,797 - 91,164,437 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl590,529,344 - 91,164,437 (+)EnsemblGRCh38hg38GRCh38
GRCh37589,854,614 - 90,460,254 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36589,890,373 - 90,495,789 (+)NCBINCBI36Build 36hg18NCBI36
Build 34589,890,372 - 90,495,788NCBI
Celera585,756,769 - 86,361,875 (+)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef585,065,303 - 85,671,984 (+)NCBIHuRef
CHM1_1589,287,285 - 89,892,836 (+)NCBICHM1_1
T2T-CHM13v2.0591,045,409 - 91,650,939 (+)NCBIT2T-CHM13v2.0
Adgrv1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391381,243,187 - 81,781,504 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1381,243,187 - 81,781,273 (-)EnsemblGRCm39 Ensembl
GRCm381381,095,068 - 81,633,391 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1381,095,068 - 81,633,154 (-)EnsemblGRCm38mm10GRCm38
MGSCv371381,234,067 - 81,772,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361381,558,504 - 82,110,481 (-)NCBIMGSCv36mm8
Celera1383,360,220 - 83,894,065 (-)NCBICelera
Cytogenetic Map13C2- C3NCBI
cM Map1342.18NCBI
Adgrv1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8213,067,149 - 13,647,407 (-)NCBIGRCr8
mRatBN7.2211,331,434 - 11,911,713 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl211,331,442 - 11,911,688 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.028,926,843 - 9,504,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl28,926,850 - 9,504,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.028,807,139 - 9,384,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.428,851,539 - 8,915,885 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera27,694,132 - 8,271,980 (-)NCBICelera
Cytogenetic Map2q11NCBI
Adgrv1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541820,603,323 - 21,039,891 (-)NCBIChiLan1.0ChiLan1.0
ADGRV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2424,233,010 - 24,835,892 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1522,386,631 - 22,989,512 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0524,208,844 - 24,811,284 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1524,341,808 - 24,945,477 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl524,341,808 - 24,945,477 (-)Ensemblpanpan1.1panPan2
ADGRV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1317,866,459 - 18,351,532 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl317,866,808 - 18,351,532 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha319,235,603 - 19,752,086 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0317,771,680 - 18,290,892 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl317,772,024 - 18,290,903 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1317,744,458 - 18,264,530 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0317,712,784 - 18,230,146 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0318,000,209 - 18,518,789 (-)NCBIUU_Cfam_GSD_1.0
Adgrv1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213173,415,524 - 173,972,750 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364698,653,031 - 9,209,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl297,735,053 - 98,275,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1297,703,648 - 98,277,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22100,813,144 - 100,957,443 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Adgrv1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247439,849,070 - 10,292,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 59
Low 16 11 1
Below cutoff 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007978079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007978168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005234632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_494199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000012801   ⟹   ENSCSAP00000010825
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl484,498,573 - 85,083,504 (+)Ensembl
RefSeq Acc Id: XM_007978079   ⟹   XP_007976270
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,636 - 85,082,813 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,210 - 34,144,188 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007978088   ⟹   XP_007976279
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,636 - 85,082,813 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,210 - 34,144,188 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007978103   ⟹   XP_007976294
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,636 - 85,082,813 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,210 - 34,144,188 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007978136   ⟹   XP_007976327
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,635 - 85,082,813 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,209 - 34,144,188 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007978151   ⟹   XP_007976342
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,633 - 84,994,983 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,205 - 34,055,584 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007978167   ⟹   XP_007976358
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,632 - 84,994,976 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,203 - 34,055,584 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005234632
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604933,558,204 - 34,144,188 (+)NCBI
RefSeq Acc Id: XR_494199
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1484,498,630 - 84,744,881 (+)NCBI
Vero_WHO_p1.0NW_02366604933,558,202 - 33,804,842 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_007976358   ⟸   XM_007978167
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RQD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976342   ⟸   XM_007978151
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RQD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976327   ⟸   XM_007978136
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RQD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976270   ⟸   XM_007978079
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976279   ⟸   XM_007978088
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RQD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976294   ⟸   XM_007978103
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RQD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010825   ⟸   ENSCSAT00000012801


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014718 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012801.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/TrEMBL
  2.60.40.2030 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro ADGRV1 UniProtKB/TrEMBL
  CalX-like_sf UniProtKB/TrEMBL
  Calx_beta UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  EAR UniProtKB/TrEMBL
  EPTP UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LamG-like UniProtKB/TrEMBL
NCBI Gene ADGRV1 ENTREZGENE
PANTHER ADHESION G-PROTEIN COUPLED RECEPTOR V1 UniProtKB/TrEMBL
  PTHR46682 UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  Calx-beta UniProtKB/TrEMBL
  EPTP UniProtKB/TrEMBL
  Laminin_G_3 UniProtKB/TrEMBL
PROSITE EAR UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
SMART Calx_beta UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LamGL UniProtKB/TrEMBL
Superfamily-SCOP SSF141072 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A0D9RQD6 ENTREZGENE, UniProtKB/TrEMBL