CA13 (carbonic anhydrase 13) - Rat Genome Database

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Gene: CA13 (carbonic anhydrase 13) Chlorocebus sabaeus
Analyze
Symbol: CA13
Name: carbonic anhydrase 13
RGD ID: 18572171
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); lyase activity (inferred); metal ion binding (inferred); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); myelin sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,617,375 - 80,654,408 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl880,617,898 - 80,651,692 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603960,445,939 - 60,482,960 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,617,375 - 80,654,408 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl880,617,898 - 80,651,692 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603960,445,939 - 60,482,960 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38885,245,458 - 85,284,073 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,220,587 - 85,284,073 (+)EnsemblGRCh38hg38GRCh38
GRCh37886,157,687 - 86,196,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,345,259 - 86,383,554 (+)NCBINCBI36Build 36hg18NCBI36
Build 34886,345,258 - 86,383,554NCBI
Celera882,162,764 - 82,201,350 (+)NCBICelera
Cytogenetic Map8q21.2NCBI
HuRef881,651,766 - 81,690,497 (+)NCBIHuRef
CHM1_1886,209,312 - 86,248,027 (+)NCBICHM1_1
T2T-CHM13v2.0885,684,055 - 85,722,800 (+)NCBIT2T-CHM13v2.0
Car13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,706,787 - 14,728,062 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl314,706,787 - 14,728,062 (+)EnsemblGRCm39 Ensembl
GRCm38314,641,727 - 14,663,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,641,727 - 14,663,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,641,727 - 14,663,002 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36314,618,518 - 14,639,139 (+)NCBIMGSCv36mm8
Celera314,649,523 - 14,670,798 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map33.12NCBI
Car13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8288,649,643 - 88,680,763 (-)NCBIGRCr8
mRatBN7.2286,928,401 - 86,959,525 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl286,928,383 - 86,959,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx293,250,938 - 93,282,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0291,371,944 - 91,403,025 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0286,428,760 - 86,459,838 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0288,282,961 - 88,314,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl288,282,961 - 88,314,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02108,055,053 - 108,086,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,271,908 - 88,309,336 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera282,519,345 - 82,549,951 (-)NCBICelera
Cytogenetic Map2q23NCBI
Ca13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,194,501 - 3,219,755 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,194,961 - 3,219,019 (+)NCBIChiLan1.0ChiLan1.0
CA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27100,981,595 - 101,020,484 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1876,614,175 - 76,653,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0881,770,852 - 81,809,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1883,381,011 - 83,419,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,381,011 - 83,419,446 (+)Ensemblpanpan1.1panPan2
CA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,784,614 - 31,833,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,782,680 - 31,850,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,067,124 - 32,112,791 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02931,932,517 - 31,980,427 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2931,932,238 - 31,968,628 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12931,988,167 - 32,033,742 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02932,006,949 - 32,052,786 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,390,753 - 32,439,552 (+)NCBIUU_Cfam_GSD_1.0
Ca13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,586,067 - 47,615,381 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544176,988 - 207,362 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936544177,336 - 206,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,408,184 - 51,468,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,406,755 - 51,468,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,422,548 - 56,483,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ca13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247446,416,664 - 6,447,315 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247446,418,487 - 6,447,023 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1
Low 35 18 21
Below cutoff 2 21

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008001000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000011260   ⟹   ENSCSAP00000009339
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl880,617,898 - 80,651,692 (+)Ensembl
RefSeq Acc Id: XM_008001000   ⟹   XP_007999191
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1880,617,375 - 80,654,408 (+)NCBI
Vero_WHO_p1.0NW_02366603960,445,939 - 60,482,960 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007999191 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009339
  ENSCSAP00000009339.1
Reference Protein Sequences
RefSeq Acc Id: XP_007999191   ⟸   XM_008001000
- UniProtKB: A0A0D9RL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000009339   ⟸   ENSCSAT00000011260


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013172 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011260.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
KEGG Report csab:103237064 UniProtKB/TrEMBL
NCBI Gene CA13 ENTREZGENE
PANTHER CARBONIC ANHYDRASE 13 UniProtKB/TrEMBL
  PTHR18952 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A0D9RL50 ENTREZGENE, UniProtKB/TrEMBL