SNX33 (sorting nexin 33) - Rat Genome Database

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Gene: SNX33 (sorting nexin 33) Chlorocebus sabaeus
Analyze
Symbol: SNX33
Name: sorting nexin 33
RGD ID: 18570534
Description: ENCODES a protein that exhibits identical protein binding (inferred); phosphatidylinositol binding (inferred); INVOLVED IN cleavage furrow formation (inferred); endocytosis (inferred); endosomal transport (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasmic vesicle (inferred); cytoplasmic vesicle membrane (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-33
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,776,989 - 7,787,873 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl267,778,390 - 7,786,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048133,905,812 - 133,921,346 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SNX33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,776,989 - 7,787,873 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl267,778,390 - 7,786,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048133,905,812 - 133,921,346 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SNX33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,647,912 - 75,662,301 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,647,912 - 75,662,301 (+)EnsemblGRCh38hg38GRCh38
GRCh371575,940,253 - 75,954,642 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,728,403 - 73,738,023 (+)NCBINCBI36Build 36hg18NCBI36
Celera1552,866,675 - 52,876,295 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,697,631 - 52,707,251 (+)NCBIHuRef
CHM1_11576,060,802 - 76,070,422 (+)NCBICHM1_1
T2T-CHM13v2.01573,518,620 - 73,533,009 (+)NCBIT2T-CHM13v2.0
Snx33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,824,472 - 56,835,726 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl956,824,477 - 56,835,655 (-)EnsemblGRCm39 Ensembl
GRCm38956,917,188 - 56,928,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl956,917,193 - 56,928,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv37956,765,007 - 56,776,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36956,715,339 - 56,725,182 (-)NCBIMGSCv36mm8
Celera954,142,295 - 54,153,467 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.48NCBI
Snx33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,213,133 - 66,224,926 (-)NCBIGRCr8
mRatBN7.2857,315,861 - 57,328,522 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl857,317,161 - 57,327,538 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx862,840,584 - 62,850,972 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,119,429 - 61,129,817 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0858,983,871 - 58,994,259 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0861,584,656 - 61,596,055 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,584,656 - 61,595,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0860,154,183 - 60,165,538 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,663,024 - 60,673,400 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1860,683,393 - 60,691,548 (-)NCBI
Celera856,785,481 - 56,795,857 (-)NCBICelera
Cytogenetic Map8q24NCBI
Snx33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,669,993 - 2,682,503 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,669,993 - 2,682,503 (-)NCBIChiLan1.0ChiLan1.0
SNX33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,841,999 - 64,855,899 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,005,407 - 69,019,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01554,556,304 - 54,570,683 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,151,053 - 74,164,612 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,151,053 - 74,159,584 (+)Ensemblpanpan1.1panPan2
SNX33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,441,311 - 38,453,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,441,305 - 38,450,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,370,931 - 38,383,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,646,051 - 38,658,557 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,646,523 - 38,655,553 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,597,183 - 38,609,664 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,643,079 - 38,655,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,879,845 - 38,892,340 (+)NCBIUU_Cfam_GSD_1.0
Snx33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,565,890 - 116,577,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647134,414,474 - 34,428,784 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647134,414,086 - 34,425,236 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl757,999,459 - 58,014,441 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1757,999,447 - 58,015,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2762,693,089 - 62,703,747 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Snx33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624894544,791 - 557,563 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624894545,411 - 557,347 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 11 4
Low 25 18 56
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008015821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000012680   ⟹   ENSCSAP00000010711
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl267,778,390 - 7,786,591 (-)Ensembl
RefSeq Acc Id: XM_008015821   ⟹   XP_008014012
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1267,776,989 - 7,787,873 (-)NCBI
Vero_WHO_p1.0NW_023666048133,905,812 - 133,921,346 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008014012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010711.1
Reference Protein Sequences
RefSeq Acc Id: XP_008014012   ⟸   XM_008015821
- UniProtKB: A0A0D9RQ22 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010711   ⟸   ENSCSAT00000012680


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014590 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012680.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SNX33_BAR UniProtKB/TrEMBL
  Snx9_fam UniProtKB/TrEMBL
  Sorting_nexin_WASP-bd-dom UniProtKB/TrEMBL
KEGG Report csab:103245305 UniProtKB/TrEMBL
NCBI Gene SNX33 ENTREZGENE
PANTHER PTHR45827:SF3 UniProtKB/TrEMBL
  SORTING NEXIN UniProtKB/TrEMBL
Pfam BAR_3_WASP_bdg UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PIRSF Snx9 UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A0D9RQ22 ENTREZGENE, UniProtKB/TrEMBL