JRK (Jrk helix-turn-helix protein)

Gene: JRK (Jrk helix-turn-helix protein) Chlorocebus sabaeus

Analyze

Symbol:

JRK

Name:

Jrk helix-turn-helix protein

RGD ID:

18569033

Description:

ENCODES a protein that exhibits DNA binding (inferred); mRNA binding (inferred); INVOLVED IN positive regulation of canonical Wnt signaling pathway (inferred); ASSOCIATED WITH childhood absence epilepsy (ortholog); Generalized Epilepsy (ortholog); juvenile myoclonic epilepsy (ortholog); FOUND IN ribosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

jerky protein homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	JRK (Jrk helix-turn-helix protein)	NCBI	Ortholog
Mus musculus (house mouse):	Jrk (jerky)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Jrk (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Jrk (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	JRK (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	JRK (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Jrk (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	JRK (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Jrk (Jrk helix-turn-helix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	136,896,858 - 136,916,951 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	136,911,217 - 136,912,923 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,062,125 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

childhood absence epilepsy (ISO)

Generalized Epilepsy (ISO)

juvenile myoclonic epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of canonical Wnt signaling pathway (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

ribonucleoprotein complex (IEA)

ribosome (ISO)

Molecular Function

DNA binding (IEA)

mRNA binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

JRK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	136,896,858 - 136,916,951 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	136,911,217 - 136,912,923 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,062,125 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JRK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	142,643,682 - 142,669,967 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	142,657,460 - 142,681,968 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	143,738,874 - 143,751,385 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	143,735,876 - 143,748,403 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	143,740,949 - 143,744,929	NCBI
Celera	8	140,050,845 - 140,059,905 (-)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	138,992,044 - 139,001,104 (-)	NCBI		HuRef
CHM1_1	8	143,779,121 - 143,791,657 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	143,785,226 - 143,813,495 (-)	NCBI		T2T-CHM13v2.0

Jrk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	74,574,261 - 74,581,171 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	74,574,150 - 74,581,384 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	74,702,412 - 74,709,322 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	74,702,301 - 74,709,535 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	74,534,993 - 74,539,752 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	74,529,667 - 74,536,552 (-)	NCBI		MGSCv36	mm8
Celera	15	76,209,504 - 76,214,263 (-)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	34.26	NCBI

Jrk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	108,479,646 - 108,484,329 (-)	NCBI		GRCr8
mRatBN7.2	7	106,590,662 - 106,595,345 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	106,589,484 - 106,596,371 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	108,348,968 - 108,353,651 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	110,572,648 - 110,577,331 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	110,518,577 - 110,523,260 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	115,941,788 - 115,946,471 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	115,942,743 - 115,946,425 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	115,847,177 - 115,851,860 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	112,819,393 - 112,824,076 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	112,854,824 - 112,856,507 (-)	NCBI
Celera	7	102,991,917 - 102,996,601 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Jrk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	1,415,811 - 1,423,705 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	1,415,811 - 1,423,705 (-)	NCBI	ChiLan1.0	ChiLan1.0

JRK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	160,077,802 - 160,106,910 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	135,608,914 - 135,634,068 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	139,362,543 - 139,382,226 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	142,413,460 - 142,426,103 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	142,413,460 - 142,426,103 (-)	Ensembl	panpan1.1		panPan2

JRK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	36,754,771 - 36,767,799 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	36,630,944 - 36,643,847 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	37,158,359 - 37,171,264 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	37,167,130 - 37,168,755 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	36,877,100 - 36,889,991 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	36,966,754 - 36,979,634 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	37,388,827 - 37,401,705 (-)	NCBI		UU_Cfam_GSD_1.0

Jrk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	1,717,563 - 1,729,698 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	9,152,850 - 9,154,520 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	9,152,417 - 9,155,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JRK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	1,490,800 - 1,492,356 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	1,476,298 - 1,493,597 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Jrk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	13,928,822 - 13,930,501 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	13,923,296 - 13,931,788 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	1		12
Low	35	20	48
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008001681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038000068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005240894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005240895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005240896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005240897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_498841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000018722 ⟹ ENSCSAP00000018158

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	8	136,911,217 - 136,912,923 (-)	Ensembl

RefSeq Acc Id:

XM_008001684 ⟹ XP_007999875

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	136,905,198 - 136,916,950 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,051,209 (+)	NCBI

Sequence:

show sequence

GGCCTCTTGCCCTCCCAGGCCCTGCGTTGCCACCCGGCTCTGGGAAAGCCGGAGTCTGGCTCCC
AGACACCACTGAGCGCCGAGTCCTCCAGCCTGTCTAGAGCGTACCGGAAGTAGCTGGGGGAAGG
CGACGAGGCGCGGACTGGAGGAGAACTGAGTGGCCGGCACTTCCGGCCGGCGGTGGCTGCTCCG
GCTGAGCAGGCCCCTGAAGTGCTGTGCCTGGAGATACCATTGTGGACCCTGGAGAGGCACCCTG
CAGCTTATGCGGTAAAACCTCGACCACCCCAAACCTGGTCAGTTTGAGGGGAGCTGCTGCCACA
GTATCCACTGAGGCCGGGGTTCCAGTCGTGTGGAGCAGCAGAGGGGAGTCTGACAGGGCCACCT
CCTCCACAGAGAGAACTGGCAGCCGACTGCACGGCCGGAGCGAAGGCCTGGGGGTGTGGAGCCT
GGAAGACCAGGGACACCTGAGGCGGGAGGTGCAGCGTGTGGAGTGGGGAACCCGAGACGGACTA
GGGCCTGTGCTCAGGATCAGGCAGGCAGAGTGGAGAGGGAGAGACGGAGCCCTGGAAGGGGAGC
AGGAGGAGGGGGAGTAGTGGCAGCAGCCCAGGCCAAGCGTGTGTCCTGCAAGTGCTAGGACCAG
CTACCCCTCCCCATGGCCTCCAAGCCGGCTGCCGGGAAGAGCGGAGGGGAGAAGCGGAAGAGGG
TGGTGCTGACGCTGAAGGAGAAGATTGACATCTGCACGCGCCTGGAGAAGGGCGAGAGCCGGAA
GGCGCTGATGCAGGAGTACAACGTGGGCATGTCCACCCTCTACGACATCAGGGCCCACAAGGCA
CAGCTGCTTCGGTTCTTTGCCAGCTCGGACTCCAACAAGGCACTGGAGCAGCGGCGCACGCTGC
ACACGCCCAAGCTGGAGCACCTGGACCGCGTCCTGTACGAGTGGTTCCTGGGGAAGCGCTCCGA
GGGCGTCCCCGTGTCAGGCCCCATGCTCATCGAGAAGGCCAAGGACTTCTACGAGCAGATGCAG
CTCACTGAGCCCTGTGTGTTCTCTGGAGGGTGGCTTTGGCGCTTTAAGGCCAGACACGGCATTA
AAAAGCTAGATGCATCCAGTGAAAAGCAGGCAGCCGACCACCAGGCCGCGGAGCAGTTCTGTGG
GTTTTTCAGGAGCTTGGCTGCCGAGCACGGGCTGTCCCCCGAGCAGGTTTACAACGCTGATGAG
ACCGGCCTTTTCTGGCGGTGCCTGCCAAATCCCACTCCAGAAGGCGGGGCCGTGCCTGGCCTCA
AGCAGAGCAAGGACCGGCTGACCGTGCTGATGTGTGCCAACGCCACGGGCTCCCACAGGCTCAA
GCCCTTGGCCATCGGGAAATGCAGCGGCCCCAGGGCTTTCAAAGGCATCCAGCACCTGCCTGTA
GCCTATAAGGCCCAGGGGAGCGCCTGGGTGGACAAGGAGATTTTTTCCGATTGGTTCCATCATA
TCTTTGTGCCCTCGGTGAGAGAGCACTTCAGAACCATAGGTTTGCCAGAAGACAGCAAGGCCGT
TCTCTTGCTGGACAGCTCCCGGGCTCACCCGCAGGAGGCCGAGCTGGTGTCCAGCAATGTTTTC
ACCATCTTCCTGCCTGCCAGCGTGGCCTCACTGGTGCAGCCCATGGAGCAGGGCATTCGGAGAG
ACTTCATGAGGAACTTCATTAACCCTCCGGCCCCCCTGCAGGGCCCCCACGCCCGCCACAATAT
GAATGATGCCATATTCAGCATGGCCTGTGCCTGGAACGCAATTCCCACTCACGTCTTCAGGCGG
GCCTGGAGGAAGCTGTGGCCATCAGTTGTGTTTGCTGAAGGCTCCTCCTCTGAGGAGGAGGTGG
AGGCAGAGCACTTCCAAGCGAAGCCCCACAACAAATCCTTTGCGCACATCCTGGAGCTTGTGAA
GGAAGGCTCCTCCTGCCCAGGCCAGCTTCGCCAGCGCCAGGCCGCCGGCTGGGGTGTAGCAGGA
AGGGAGGCAGAAGGGGGACAACCCCCTGCTGCCACGTTGCCAGCAGAGGTTGTGTGGGGTTCAG
AAAAGACTCTGAAAGCTGACCAAGACAGTAGAGGAGATCCTGGTGAGGGTGAAGAGGCGGCCTG
GGAGCAGGCAGCCGTGGCCTTCGACGCAGTCCTGCGCTTTGCGGAGCGGCAGCCATGCTTCAGT
GCACAGGAAGTGGGGCAGCTGCGAGCGCTGCGTGCCGTGTTCCGGAGCCAGCAGCAGGAGGCTG
TGGGCCCTGAGGATGTGGTAGTGACCTCACCAGAGGAGCTGGCAATTCCTAAGTGCTGCCCGGA
GGCCTCTACAGAGACATAATGTTGGAGAACTTCTGCCTCTTGGCAGTGCTGGGTAAGACCCCTT
TGTCCCCACCAGTGCCCTTGAGGGTATGGGTGTTGGTCGGTGTGTGGCGTCCATCTCCGTAATG
ATGGTATTAAGGACTGCATGTTTGTGTCCCCCCCAAAGTTTATATGTTGAAACCCTGACCCCCA
GTAGGGTGGTATTAGGAGGTGGGGCCTTTGGGAGGTGACTAGGCTTAGGTGAGGTCATGAGGGT
GGGGCTCCCCGATGAGATTGAGTCCTTAAAAGGAAGGAACTAGAGCAAGGTCTCTTTCTGCTGT
GTGATCATACAAGAAAATTGCCATCTTTCAAGCTGGGTGCAGTGGTTGACGCCTGTAATCCCAG
CACTGGAAGGCCAAGGCATTAGGATTGCTTTGAGTCCAGGAGTTCGAGACCAGCCTAGGCATGA
TAAGACCTTATCGCTAAAAGGAAGAAATAAAATAAAAAACTGCCATCTG

hide sequence

RefSeq Acc Id:

XM_008001685 ⟹ XP_007999876

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	136,903,665 - 136,916,951 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,052,795 (+)	NCBI

Sequence:

show sequence

AGGCCTCTTGCCCTCCCAGGCCCTGCGTTGCCACCCGGCTCTGGGAAAGCCGGAGTCTGGCTCC
CAGACACCACTGAGCGCCGAGTCCTCCAGCCTGTCTAGAGCGTACCGGAAGTAGCTGGGGGAAG
GCGACGAGGCGCGGACTGGAGGAGAACTGAGTGGCCGGCACTTCCGGCCGGCGGTGGCTGCTCC
GGCTGAGCAGGCCCCTGAAGTGCTGTGCCTGGAGATACCATTGTGGACCCTGGAGAGGCACCCT
GCAGCTTATGCGGTAAAACCTCGACCACCCCAAACCTGGTCAGTTTGAGGGGAGCTGCTGCCAC
AGTATCCACTGAGGCCGGGGTTCCAGTCGTGTGGAGCAGCAGAGGGGAGTCTGACAGGGCCACC
TCCTCCACAGAGAGAACTGGCAGCCGACTGCACGGCCGGAGCGAAGGCCTGGGGGTGTGGAGCC
TGGAAGACCAGGGACACCTGAGGCGGGAGGTGCAGCGTGTGGAGTGGGGAACCCGAGACGGACT
AGGGCCTGTGCTCAGGATCAGGCAGGCAGAGTGGAGAGGGAGAGACGGAGCCCTGGAAGGGGAG
CAGGAGGAGGGGGAGTAGTGGCAGCAGCCCAGGCCAAGCGTGTGTCCTGCAAGTGCTAGGACCA
GCTACCCCTCCCCATGGCCTCCAAGCCGGCTGCCGGGAAGAGCGGAGGGGAGAAGCGGAAGAGG
GTGGTGCTGACGCTGAAGGAGAAGATTGACATCTGCACGCGCCTGGAGAAGGGCGAGAGCCGGA
AGGCGCTGATGCAGGAGTACAACGTGGGCATGTCCACCCTCTACGACATCAGGGCCCACAAGGC
ACAGCTGCTTCGGTTCTTTGCCAGCTCGGACTCCAACAAGGCACTGGAGCAGCGGCGCACGCTG
CACACGCCCAAGCTGGAGCACCTGGACCGCGTCCTGTACGAGTGGTTCCTGGGGAAGCGCTCCG
AGGGCGTCCCCGTGTCAGGCCCCATGCTCATCGAGAAGGCCAAGGACTTCTACGAGCAGATGCA
GCTCACTGAGCCCTGTGTGTTCTCTGGAGGGTGGCTTTGGCGCTTTAAGGCCAGACACGGCATT
AAAAAGCTAGATGCATCCAGTGAAAAGCAGGCAGCCGACCACCAGGCCGCGGAGCAGTTCTGTG
GGTTTTTCAGGAGCTTGGCTGCCGAGCACGGGCTGTCCCCCGAGCAGGTTTACAACGCTGATGA
GACCGGCCTTTTCTGGCGGTGCCTGCCAAATCCCACTCCAGAAGGCGGGGCCGTGCCTGGCCTC
AAGCAGAGCAAGGACCGGCTGACCGTGCTGATGTGTGCCAACGCCACGGGCTCCCACAGGCTCA
AGCCCTTGGCCATCGGGAAATGCAGCGGCCCCAGGGCTTTCAAAGGCATCCAGCACCTGCCTGT
AGCCTATAAGGCCCAGGGGAGCGCCTGGGTGGACAAGGAGATTTTTTCCGATTGGTTCCATCAT
ATCTTTGTGCCCTCGGTGAGAGAGCACTTCAGAACCATAGGTTTGCCAGAAGACAGCAAGGCCG
TTCTCTTGCTGGACAGCTCCCGGGCTCACCCGCAGGAGGCCGAGCTGGTGTCCAGCAATGTTTT
CACCATCTTCCTGCCTGCCAGCGTGGCCTCACTGGTGCAGCCCATGGAGCAGGGCATTCGGAGA
GACTTCATGAGGAACTTCATTAACCCTCCGGCCCCCCTGCAGGGCCCCCACGCCCGCCACAATA
TGAATGATGCCATATTCAGCATGGCCTGTGCCTGGAACGCAATTCCCACTCACGTCTTCAGGCG
GGCCTGGAGGAAGCTGTGGCCATCAGTTGTGTTTGCTGAAGGCTCCTCCTCTGAGGAGGAGGTG
GAGGCAGAGCACTTCCAAGCGAAGCCCCACAACAAATCCTTTGCGCACATCCTGGAGCTTGTGA
AGGAAGGCTCCTCCTGCCCAGGCCAGCTTCGCCAGCGCCAGGCCGCCGGCTGGGGTGTAGCAGG
AAGGGAGGCAGAAGGGGGACAACCCCCTGCTGCCACGTTGCCAGCAGAGGTTGTGTGGGGTTCA
GAAAAGACTCTGAAAGCTGACCAAGACAGTAGAGGAGATCCTGGTGAGGGTGAAGAGGCGGCCT
GGGAGCAGGCAGCCGTGGCCTTCGACGCAGTCCTGCGCTTTGCGGAGCGGCAGCCATGCTTCAG
TGCACAGGAAGTGGGGCAGCTGCGAGCGCTGCGTGCCGTGTTCCGGAGCCAGCAGCAGGAGGCT
GTGGGCCCTGAGGATGTGGTAGTGACCTCACCAGAGGAGCTGGCAATTCCTAAGTGCTGCCCGG
AGGCCTCTACAGAGACATAATGTTGGAGAACTTCTGCCTCTTGGCAGTGCTGGGGAACCACAGG
GTTGAAGATGTTACAGGACACCTGCTCCAGTCCCTTCCACTGTGTCTGCCTCCAGAAAGCACAC
CACTTCTGTTCATGTCCCTCGAGCCAGGTCCCAGTCATGTGAGTACAACTAGTTATAAAAGGTT
TGGGGAGCATGGTTGTAGAGGATGGGTGAGCGAGTATAGGACTCATCTAGCAGTGCGAGTCGGC
CCAGGCCTTGTGCCTTCATGCCTGCTCCAGCAGTTATGTCTGATCTTCCCCATCTCTGTAAGGA
GAGAGCAGAGGTTCCAGCCTGCTTCAGGTCCAGGCAGTTCTGTGGGCTTCGTGGATGTGGCAGT
GACTTCACCAGAGGAGCTGGCAATTCCTAAGCCCTCCCCAGAGGCTTCCACAGAGACATAATGT
TGGAGAACTGCCTCATGGCAGGGCTGGGCACAGGGCAGATTTACGAGGTGAGCTTAGGGTGTGA
GGGATGGAGGCAGGCAACAACCCTTGGTGGGCCTCACCTGTAGAGTGGGGGTTCCATACTGAGA
GGCAAGCCCGGACAACCTGGGATTGCTGACTCCTCTCCCATCAAATG

hide sequence

RefSeq Acc Id:

XM_008001686 ⟹ XP_007999877

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	136,896,860 - 136,916,951 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,060,138 (+)	NCBI

Sequence:

show sequence

AGGCCTCTTGCCCTCCCAGGCCCTGCGTTGCCACCCGGCTCTGGGAAAGCCGGAGTCTGGCTCC
CAGACACCACTGAGCGCCGAGTCCTCCAGCCTGTCTAGAGCGTACCGGAAGTAGCTGGGGGAAG
GCGACGAGGCGCGGACTGGAGGAGAACTGAGTGGCCGGCACTTCCGGCCGGCGGTGGCTGCTCC
GGCTGAGCAGGCCCCTGAAGTGCTGTGCCTGGAGATACCATTGTGGACCCTGGAGAGGCACCCT
GCAGCTTATGCGGTAAAACCTCGACCACCCCAAACCTGGTCAGTTTGAGGGGAGCTGCTGCCAC
AGTATCCACTGAGGCCGGGGTTCCAGTCGTGTGGAGCAGCAGAGGGGAGTCTGACAGGGCCACC
TCCTCCACAGAGAGAACTGGCAGCCGACTGCACGGCCGGAGCGAAGGCCTGGGGGTGTGGAGCC
TGGAAGACCAGGGACACCTGAGGCGGGAGGTGCAGCGTGTGGAGTGGGGAACCCGAGACGGACT
AGGGCCTGTGCTCAGGATCAGGCAGGCAGAGTGGAGAGGGAGAGACGGAGCCCTGGAAGGGGAG
CAGGAGGAGGGGGAGTAGTGGCAGCAGCCCAGGCCAAGCGTGTGTCCTGCAAGTGCTAGGACCA
GCTACCCCTCCCCATGGCCTCCAAGCCGGCTGCCGGGAAGAGCGGAGGGGAGAAGCGGAAGAGG
GTGGTGCTGACGCTGAAGGAGAAGATTGACATCTGCACGCGCCTGGAGAAGGGCGAGAGCCGGA
AGGCGCTGATGCAGGAGTACAACGTGGGCATGTCCACCCTCTACGACATCAGGGCCCACAAGGC
ACAGCTGCTTCGGTTCTTTGCCAGCTCGGACTCCAACAAGGCACTGGAGCAGCGGCGCACGCTG
CACACGCCCAAGCTGGAGCACCTGGACCGCGTCCTGTACGAGTGGTTCCTGGGGAAGCGCTCCG
AGGGCGTCCCCGTGTCAGGCCCCATGCTCATCGAGAAGGCCAAGGACTTCTACGAGCAGATGCA
GCTCACTGAGCCCTGTGTGTTCTCTGGAGGGTGGCTTTGGCGCTTTAAGGCCAGACACGGCATT
AAAAAGCTAGATGCATCCAGTGAAAAGCAGGCAGCCGACCACCAGGCCGCGGAGCAGTTCTGTG
GGTTTTTCAGGAGCTTGGCTGCCGAGCACGGGCTGTCCCCCGAGCAGGTTTACAACGCTGATGA
GACCGGCCTTTTCTGGCGGTGCCTGCCAAATCCCACTCCAGAAGGCGGGGCCGTGCCTGGCCTC
AAGCAGAGCAAGGACCGGCTGACCGTGCTGATGTGTGCCAACGCCACGGGCTCCCACAGGCTCA
AGCCCTTGGCCATCGGGAAATGCAGCGGCCCCAGGGCTTTCAAAGGCATCCAGCACCTGCCTGT
AGCCTATAAGGCCCAGGGGAGCGCCTGGGTGGACAAGGAGATTTTTTCCGATTGGTTCCATCAT
ATCTTTGTGCCCTCGGTGAGAGAGCACTTCAGAACCATAGGTTTGCCAGAAGACAGCAAGGCCG
TTCTCTTGCTGGACAGCTCCCGGGCTCACCCGCAGGAGGCCGAGCTGGTGTCCAGCAATGTTTT
CACCATCTTCCTGCCTGCCAGCGTGGCCTCACTGGTGCAGCCCATGGAGCAGGGCATTCGGAGA
GACTTCATGAGGAACTTCATTAACCCTCCGGCCCCCCTGCAGGGCCCCCACGCCCGCCACAATA
TGAATGATGCCATATTCAGCATGGCCTGTGCCTGGAACGCAATTCCCACTCACGTCTTCAGGCG
GGCCTGGAGGAAGCTGTGGCCATCAGTTGTGTTTGCTGAAGGCTCCTCCTCTGAGGAGGAGGTG
GAGGCAGAGCACTTCCAAGCGAAGCCCCACAACAAATCCTTTGCGCACATCCTGGAGCTTGTGA
AGGAAGGCTCCTCCTGCCCAGGCCAGCTTCGCCAGCGCCAGGCCGCCGGCTGGGGTGTAGCAGG
AAGGGAGGCAGAAGGGGGACAACCCCCTGCTGCCACGTTGCCAGCAGAGGTTGTGTGGGGTTCA
GAAAAGACTCTGAAAGCTGACCAAGACAGTAGAGGAGATCCTGGTGAGGGTGAAGAGGCGGCCT
GGGAGCAGGCAGCCGTGGCCTTCGACGCAGTCCTGCGCTTTGCGGAGCGGCAGCCATGCTTCAG
TGCACAGGAAGTGGGGCAGCTGCGAGCGCTGCGTGCCGTGTTCCGGAGCCAGCAGCAGGAGGCT
GTGGGCCCTGAGGATGTGGTAGTGACCTCACCAGAGGAGCTGGCAATTCCTAAGTGCTGCCCGG
AGGCCTCTACAGAGACATAATGTTGGAGAACTTCTGCCTCTTGGCAGTGCTGGGATGGTGGAGT
GCAGTCTTCAGCCTGAGATCCATTCCTA

hide sequence

RefSeq Acc Id:

XM_008001687 ⟹ XP_007999878

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	136,904,235 - 136,916,951 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,052,795 (+)	NCBI

Sequence:

show sequence

AGGCCTCTTGCCCTCCCAGGCCCTGCGTTGCCACCCGGCTCTGGGAAAGCCGGAGTCTGGCTCC
CAGACACCACTGAGCGCCGAGTCCTCCAGCCTGTCTAGAGCGTACCGGAAGTAGCTGGGGGAAG
GCGACGAGGCGCGGACTGGAGGAGAACTGAGTGGCCGGCACTTCCGGCCGGCGGTGGCTGCTCC
GGCTGAGCAGGCCCCTGAAGTGCTGTGCCTGGAGATACCATTGTGGACCCTGGAGAGGCACCCT
GCAGCTTATGCGGTAAAACCTCGACCACCCCAAACCTGGTCAGTTTGAGGGGAGCTGCTGCCAC
AGTATCCACTGAGGCCGGGGTTCCAGTCGTGTGGAGCAGCAGAGGGGAGTCTGACAGGGCCACC
TCCTCCACAGAGAGAACTGGCAGCCGACTGCACGGCCGGAGCGAAGGCCTGGGGGTGTGGAGCC
TGGAAGACCAGGGACACCTGAGGCGGGAGGTGCAGCGTGTGGAGTGGGGAACCCGAGACGGACT
AGGGCCTGTGCTCAGGATCAGGCAGGCAGAGTGGAGAGGGAGAGACGGAGCCCTGGAAGGGGAG
CAGGAGGAGGGGGAGTAGTGGCAGCAGCCCAGGCCAAGCGTGTGTCCTGCAAGTGCTAGGACCA
GCTACCCCTCCCCATGGCCTCCAAGCCGGCTGCCGGGAAGAGCGGAGGGGAGAAGCGGAAGAGG
GTGGTGCTGACGCTGAAGGAGAAGATTGACATCTGCACGCGCCTGGAGAAGGGCGAGAGCCGGA
AGGCGCTGATGCAGGAGTACAACGTGGGCATGTCCACCCTCTACGACATCAGGGCCCACAAGGC
ACAGCTGCTTCGGTTCTTTGCCAGCTCGGACTCCAACAAGGCACTGGAGCAGCGGCGCACGCTG
CACACGCCCAAGCTGGAGCACCTGGACCGCGTCCTGTACGAGTGGTTCCTGGGGAAGCGCTCCG
AGGGCGTCCCCGTGTCAGGCCCCATGCTCATCGAGAAGGCCAAGGACTTCTACGAGCAGATGCA
GCTCACTGAGCCCTGTGTGTTCTCTGGAGGGTGGCTTTGGCGCTTTAAGGCCAGACACGGCATT
AAAAAGCTAGATGCATCCAGTGAAAAGCAGGCAGCCGACCACCAGGCCGCGGAGCAGTTCTGTG
GGTTTTTCAGGAGCTTGGCTGCCGAGCACGGGCTGTCCCCCGAGCAGGTTTACAACGCTGATGA
GACCGGCCTTTTCTGGCGGTGCCTGCCAAATCCCACTCCAGAAGGCGGGGCCGTGCCTGGCCTC
AAGCAGAGCAAGGACCGGCTGACCGTGCTGATGTGTGCCAACGCCACGGGCTCCCACAGGCTCA
AGCCCTTGGCCATCGGGAAATGCAGCGGCCCCAGGGCTTTCAAAGGCATCCAGCACCTGCCTGT
AGCCTATAAGGCCCAGGGGAGCGCCTGGGTGGACAAGGAGATTTTTTCCGATTGGTTCCATCAT
ATCTTTGTGCCCTCGGTGAGAGAGCACTTCAGAACCATAGGTTTGCCAGAAGACAGCAAGGCCG
TTCTCTTGCTGGACAGCTCCCGGGCTCACCCGCAGGAGGCCGAGCTGGTGTCCAGCAATGTTTT
CACCATCTTCCTGCCTGCCAGCGTGGCCTCACTGGTGCAGCCCATGGAGCAGGGCATTCGGAGA
GACTTCATGAGGAACTTCATTAACCCTCCGGCCCCCCTGCAGGGCCCCCACGCCCGCCACAATA
TGAATGATGCCATATTCAGCATGGCCTGTGCCTGGAACGCAATTCCCACTCACGTCTTCAGGCG
GGCCTGGAGGAAGCTGTGGCCATCAGTTGTGTTTGCTGAAGGCTCCTCCTCTGAGGAGGAGGTG
GAGGCAGAGCACTTCCAAGCGAAGCCCCACAACAAATCCTTTGCGCACATCCTGGAGCTTGTGA
AGGAAGGCTCCTCCTGCCCAGGCCAGCTTCGCCAGCGCCAGGCCGCCGGCTGGGGTGTAGCAGG
AAGGGAGGCAGAAGGGGGACAACCCCCTGCTGCCACGTTGCCAGCAGAGGTTGTGTGGGGTTCA
GAAAAGACTCTGAAAGCTGACCAAGACAGTAGAGGAGATCCTGGTGAGGGTGAAGAGGCGGCCT
GGGAGCAGGCAGCCGTGGCCTTCGACGCAGTCCTGCGCTTTGCGGAGCGGCAGCCATGCTTCAG
TGCACAGGAAGTGGGGCAGCTGCGAGCGCTGCGTGCCGTGTTCCGGAGCCAGCAGCAGGAGGCT
GTGGGCCCTGAGGATGTGGTAGTGACCTCACCAGAGGAGCTGGCAATTCCTAAGTGCTGCCCGG
AGGCCTCTACAGAGACATAATGTTGGAGAACTTCTGCCTCTTGGCAGTGCTGGACCAAGATATG
CCATGTGTATTTCATGAAG

hide sequence

RefSeq Acc Id:

XM_038000068 ⟹ XP_037855996

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,060,138 (+)	NCBI

RefSeq Acc Id:

XM_038000069 ⟹ XP_037855997

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,062,125 (+)	NCBI

RefSeq Acc Id:

XR_005240894

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,051,209 (+)	NCBI

RefSeq Acc Id:

XR_005240895

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	3,039,959 - 3,051,209 (+)	NCBI

RefSeq Acc Id:

XR_005240896

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,051,209 (+)	NCBI

RefSeq Acc Id:

XR_005240897

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	3,038,439 - 3,062,125 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007999875	(Get FASTA)	NCBI Sequence Viewer
	XP_007999876	(Get FASTA)	NCBI Sequence Viewer
	XP_007999877	(Get FASTA)	NCBI Sequence Viewer
	XP_007999878	(Get FASTA)	NCBI Sequence Viewer
	XP_037855996	(Get FASTA)	NCBI Sequence Viewer
	XP_037855997	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000018158.1

RefSeq Acc Id:	XP_007999877 ⟸ XM_008001686
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBB9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007999876 ⟸ XM_008001685
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBB9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007999878 ⟸ XM_008001687
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBB9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007999875 ⟸ XM_008001684
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9SBB9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000018158 ⟸ ENSCSAT00000018722

RefSeq Acc Id:	XP_037855997 ⟸ XM_038000069
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9SBB9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037855996 ⟸ XM_038000068
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9SBB9 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000018632	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000018722.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	DDE_SF_endonuclease_dom	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	HTH_CenpB_DNA-bd_dom	UniProtKB/TrEMBL
	HTH_Psq	UniProtKB/TrEMBL
KEGG Report	csab:103237535	UniProtKB/TrEMBL
NCBI Gene	JRK	ENTREZGENE
PANTHER	JERKY PROTEIN HOMOLOG	UniProtKB/TrEMBL
	TRANSPOSON	UniProtKB/TrEMBL
Pfam	CENP-B_N	UniProtKB/TrEMBL
	DDE_1	UniProtKB/TrEMBL
	HTH_Tnp_Tc5	UniProtKB/TrEMBL
PROSITE	HTH_CENPB	UniProtKB/TrEMBL
	HTH_PSQ	UniProtKB/TrEMBL
SMART	CENPB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A0D9SBB9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD