MYH9 (myosin heavy chain 9) - Rat Genome Database

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Gene: MYH9 (myosin heavy chain 9) Chlorocebus sabaeus
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Symbol: MYH9
Name: myosin heavy chain 9
RGD ID: 18567089
Description: ENCODES a protein that exhibits actin filament binding (ortholog); ADP binding (ortholog); follicle-stimulating hormone receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament bundle assembly (ortholog); actin filament bundle distribution (ortholog); PARTICIPATES IN follicle-stimulating hormone signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); AIDS-Associated Nephropathy (ortholog); Albuminuria (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); actomyosin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myosin-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,985,709 - 19,093,304 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1918,986,598 - 19,052,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,805,704 - 106,913,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (ISO)
actin filament bundle assembly  (ISO)
actin filament bundle distribution  (ISO)
actin filament capping  (ISO)
actin filament polymerization  (ISO)
actin filament-based movement  (ISO)
actomyosin structure organization  (ISO)
angiogenesis  (ISO)
blood vessel endothelial cell migration  (ISO)
cell adhesion  (ISO)
cell morphogenesis  (ISO)
cell motility  (ISO)
cell-cell adhesion  (ISO)
cellular response to mechanical stimulus  (ISO)
cellular response to platelet-derived growth factor stimulus  (ISO)
cortical granule exocytosis  (ISO)
cytokinetic process  (ISO)
endodermal cell differentiation  (ISO)
establishment of meiotic spindle localization  (ISO)
establishment of T cell polarity  (ISO)
follicle-stimulating hormone signaling pathway  (ISO)
in utero embryonic development  (ISO)
lysosome localization  (ISO)
meiotic spindle organization  (ISO)
membrane protein ectodomain proteolysis  (ISO)
monocyte differentiation  (ISO)
myoblast fusion  (ISO)
negative regulation of actin filament severing  (ISO)
negative regulation of vascular associated smooth muscle cell migration  (ISO)
phagocytosis, engulfment  (ISO)
phospholipase C-activating G protein-coupled receptor signaling pathway  (ISO)
plasma membrane repair  (ISO)
platelet aggregation  (ISO)
platelet formation  (ISO)
positive regulation of endocytosis  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of focal adhesion assembly  (ISO)
positive regulation of G protein-coupled receptor signaling pathway  (ISO)
positive regulation of inositol trisphosphate biosynthetic process  (ISO)
positive regulation of insulin secretion involved in cellular response to glucose stimulus  (ISO)
positive regulation of phagocytosis  (ISO)
positive regulation of protein processing in phagocytic vesicle  (ISO)
protein transport  (ISO)
regulated exocytosis  (ISO)
regulation of actin filament organization  (ISO)
regulation of cell shape  (IEA,ISO)
regulation of plasma membrane repair  (ISO)
uropod organization  (ISO)
vesicle targeting  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
MYH9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,985,709 - 19,093,304 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1918,986,598 - 19,052,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,805,704 - 106,913,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MYH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,281,280 - 36,387,967 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,281,280 - 36,388,010 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,677,326 - 36,784,012 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,007,272 - 35,113,927 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,001,826 - 35,108,481NCBI
Celera2220,479,895 - 20,586,681 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,645,404 - 19,752,216 (-)NCBIHuRef
CHM1_12236,636,447 - 36,743,196 (-)NCBICHM1_1
T2T-CHM13v2.02236,741,430 - 36,848,142 (-)NCBIT2T-CHM13v2.0
Myh9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,644,788 - 77,726,315 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,644,787 - 77,726,375 (-)EnsemblGRCm39 Ensembl
GRCm381577,760,585 - 77,842,175 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,760,587 - 77,842,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,591,019 - 77,672,545 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,587,843 - 77,669,360 (-)NCBIMGSCv36mm8
Celera1579,227,040 - 79,308,545 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.81NCBI
Myh9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,224,291 - 111,304,963 (-)NCBIGRCr8
mRatBN7.27109,343,718 - 109,424,457 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,343,706 - 109,424,457 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,099,271 - 111,152,015 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,322,832 - 113,375,576 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,284,741 - 113,337,445 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07118,740,005 - 118,792,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,741,110 - 118,792,625 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,992,356 - 119,071,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,737,555 - 118,797,086 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,681,459 - 115,732,774 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,715,686 - 115,767,004 (-)NCBI
Celera7105,684,430 - 105,736,878 (-)NCBICelera
RH 3.4 Map7811.2RGD
Cytogenetic Map7q34NCBI
Myh9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541322,881,045 - 22,972,450 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541322,881,759 - 22,972,182 (-)NCBIChiLan1.0ChiLan1.0
MYH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,139,687 - 46,244,930 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12248,831,242 - 48,936,531 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,200,623 - 17,305,826 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,039,461 - 35,121,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,039,101 - 35,121,618 (-)Ensemblpanpan1.1panPan2
MYH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,063,626 - 28,122,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,063,624 - 28,122,953 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,985,072 - 28,076,495 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,817,559 - 28,909,010 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,817,514 - 28,909,028 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,544,285 - 28,635,641 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,853,021 - 28,944,583 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,031,010 - 29,122,482 (+)NCBIUU_Cfam_GSD_1.0
Myh9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,373,869 - 11,455,815 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,384,215 - 4,466,262 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,384,215 - 4,466,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,360,660 - 11,456,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,365,603 - 11,456,475 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.259,076,302 - 9,165,918 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Myh9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,327,877 - 11,413,669 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,327,881 - 11,414,037 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000005973   ⟹   ENSCSAP00000004185
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1918,986,598 - 19,052,671 (-)Ensembl
RefSeq Acc Id: XM_007975646   ⟹   XP_007973837
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,985,709 - 19,093,304 (-)NCBI
Vero_WHO_p1.0NW_023666045106,805,704 - 106,913,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038007503   ⟹   XP_037863431
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045106,841,218 - 106,913,195 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007973837 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863431 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004185
  ENSCSAP00000004185.1
RefSeq Acc Id: XP_007973837   ⟸   XM_007975646
- UniProtKB: A0A0D9R6E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004185   ⟸   ENSCSAT00000005973
RefSeq Acc Id: XP_037863431   ⟸   XM_038007503
- UniProtKB: A0A0D9R6E6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007963 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005973.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/TrEMBL
  2.30.30.360 UniProtKB/TrEMBL
  3.30.70.1590 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.10.250.2420 UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/TrEMBL
  Myosin, subunit A UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/TrEMBL
  Myosin_N UniProtKB/TrEMBL
  Myosin_S1_N UniProtKB/TrEMBL
  Myosin_tail UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
KEGG Report csab:103223246 UniProtKB/TrEMBL
NCBI Gene MYH9 ENTREZGENE
PANTHER MYOSIN HEAVY CHAIN, NON-MUSCLE UniProtKB/TrEMBL
  MYOSIN-9 UniProtKB/TrEMBL
Pfam Myosin_head UniProtKB/TrEMBL
  Myosin_N UniProtKB/TrEMBL
  Myosin_tail_1 UniProtKB/TrEMBL
PRINTS MYOSINHEAVY UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
  SH3_LIKE UniProtKB/TrEMBL
SMART MYSc UniProtKB/TrEMBL
  SM00015 UniProtKB/TrEMBL
Superfamily-SCOP Myosin rod fragments UniProtKB/TrEMBL
  SSF48097 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9R6E6 ENTREZGENE, UniProtKB/TrEMBL