LOC103226223 (endonuclease/exonuclease/phosphatase family domain-containing protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC103226223 (endonuclease/exonuclease/phosphatase family domain-containing protein 1) Chlorocebus sabaeus
Analyze
Symbol: LOC103226223 (Ensembl: EEPD1)
Name: endonuclease/exonuclease/phosphatase family domain-containing protein 1 (Ensembl:endonuclease/exonuclease/phosphatase family domain containing 1)
RGD ID: 18566009
Description: ENCODES a protein that exhibits catalytic activity (inferred); DNA binding (inferred); INVOLVED IN DNA repair (inferred); positive regulation of cholesterol efflux (inferred); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EEPD1; endonuclease/exonuclease/phosphatase family domain containing 1
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12122,188,341 - 22,332,123 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2122,186,445 - 22,332,072 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366618757,602 - 202,288 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 10
Low 36 20 50
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007981618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000013103   ⟹   ENSCSAP00000011114
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2122,186,445 - 22,332,072 (-)Ensembl
RefSeq Acc Id: XM_007981618   ⟹   XP_007979809
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12122,188,341 - 22,332,123 (-)NCBI
Vero_WHO_p1.0NW_02366618757,602 - 202,288 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007979809 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011114.1
Reference Protein Sequences
RefSeq Acc Id: XP_007979809   ⟸   XM_007981618
- UniProtKB: A0A0D9RR75 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011114   ⟸   ENSCSAT00000013103


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013103.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.10.10 UniProtKB/TrEMBL
  AF1531-like domain UniProtKB/TrEMBL
  Photosystem II 12 kDa extrinsic protein UniProtKB/TrEMBL
InterPro Competence_ComEA_HhH UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/TrEMBL
  Hlx-hairpin-Hlx_DNA-bd_motif UniProtKB/TrEMBL
  RuvA_2-like UniProtKB/TrEMBL
KEGG Report csab:103226223 UniProtKB/TrEMBL
NCBI Gene EEPD1 ENTREZGENE
PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/TrEMBL
  HHH_3 UniProtKB/TrEMBL
SMART HhH1 UniProtKB/TrEMBL
Superfamily-SCOP SSF47781 UniProtKB/TrEMBL
  SSF56219 UniProtKB/TrEMBL
UniProt A0A0D9RR75 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103226223  endonuclease/exonuclease/phosphatase family domain-containing protein 1  EEPD1  endonuclease/exonuclease/phosphatase family domain containing 1  Symbol and/or name change 5135510 APPROVED