LOC103241700 (collagen alpha-4(VI) chain-like) - Rat Genome Database

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Gene: LOC103241700 (collagen alpha-4(VI) chain-like) Chlorocebus sabaeus
Analyze
Symbol: LOC103241700
Name: collagen alpha-4(VI) chain-like
RGD ID: 18533406
Description: ENCODES a protein that exhibits collagen binding (inferred); serine-type endopeptidase inhibitor activity (inferred); INVOLVED IN cell adhesion (inferred); extracellular matrix organization (inferred); FOUND IN collagen trimer (inferred); collagen-containing extracellular matrix (inferred); extracellular matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11559,894,622 - 59,995,003 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604132,923,014 - 33,013,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 6 13
Below cutoff 23 4 23

Sequence


Reference Sequences
RefSeq Acc Id: XM_008009171   ⟹   XP_008007362
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11559,894,622 - 59,989,781 (-)NCBI
Vero_WHO_p1.0NW_02366604132,923,014 - 33,013,986 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008007362 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006425.1
Reference Protein Sequences
RefSeq Acc Id: XP_008007362   ⟸   XM_008009171
- UniProtKB: A0A0D9RCT6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010190 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008275.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
  4.10.410.10 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Kunitz_BPTI UniProtKB/TrEMBL
  Kunitz_BPTI_sf UniProtKB/TrEMBL
  Prtase_inh_Kunz-CS UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103241700 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  PH DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  Kunitz_BPTI UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PRINTS BASICPTASE UniProtKB/TrEMBL
  VWFADOMAIN UniProtKB/TrEMBL
PROSITE BPTI_KUNITZ_1 UniProtKB/TrEMBL
  BPTI_KUNITZ_2 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART SM00131 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
  SSF57362 UniProtKB/TrEMBL
UniProt A0A0D9RCT6 ENTREZGENE, UniProtKB/TrEMBL