SUN5 (Sad1 and UNC84 domain containing 5)

Gene: SUN5 (Sad1 and UNC84 domain containing 5) Chlorocebus sabaeus

Analyze

Symbol:

SUN5

Name:

Sad1 and UNC84 domain containing 5

RGD ID:

18525255

Description:

ENCODES a protein that exhibits protein-membrane adaptor activity (inferred); INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH spermatogenic failure 16 (ortholog); FOUND IN nuclear inner membrane (ortholog); obsolete sperm connecting piece (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SUN domain-containing protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	37,354,675 - 37,376,019 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	37,354,706 - 37,375,442 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	89,529,125 - 89,552,733 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

spermatogenic failure 16 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

spermatid development (ISO)

spermatogenesis (ISO)

Cellular Component

meiotic nuclear membrane microtubule tethering complex (IEA)

membrane (IEA)

nuclear envelope (IEA)

nuclear inner membrane (ISO)

obsolete sperm connecting piece (ISO)

Molecular Function

protein binding (ISO)

protein-membrane adaptor activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SUN5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	37,354,675 - 37,376,019 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	37,354,706 - 37,375,442 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	89,529,125 - 89,552,733 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SUN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	32,983,775 - 33,004,433 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	32,983,773 - 33,004,433 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	31,571,581 - 31,592,239 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	31,035,242 - 31,055,900 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	31,035,242 - 31,055,900	NCBI
Celera	20	28,325,457 - 28,346,116 (-)	NCBI		Celera
Cytogenetic Map	20	q11.21	NCBI
HuRef	20	28,358,932 - 28,379,615 (-)	NCBI		HuRef
CHM1_1	20	31,471,124 - 31,492,379 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	34,710,456 - 34,731,124 (-)	NCBI		T2T-CHM13v2.0

Sun5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	153,698,108 - 153,713,281 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	153,698,108 - 153,713,004 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	153,856,188 - 153,871,365 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	153,856,188 - 153,871,084 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	153,681,926 - 153,696,820 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	153,547,631 - 153,562,525 (-)	NCBI		MGSCv36	mm8
Celera	2	159,690,209 - 159,704,617 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	75.99	NCBI

Sun5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	162,795,096 - 162,815,521 (-)	NCBI		GRCr8
mRatBN7.2	3	142,334,931 - 142,355,349 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	142,334,928 - 142,355,330 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	146,237,184 - 146,257,443 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	154,821,013 - 154,841,272 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	152,561,276 - 152,581,535 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	149,336,136 - 149,356,191 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	149,336,238 - 149,356,192 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	155,714,461 - 155,733,937 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	144,236,963 - 144,257,526 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	144,142,611 - 144,166,955 (-)	NCBI
Celera	3	141,076,252 - 141,096,493 (-)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Sun5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	28,252,375 - 28,273,814 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	28,252,245 - 28,273,457 (+)	NCBI	ChiLan1.0	ChiLan1.0

SUN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	38,672,591 - 38,693,775 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	38,665,689 - 38,686,873 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	29,269,845 - 29,290,474 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	30,388,096 - 30,408,883 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	30,388,096 - 30,408,883 (-)	Ensembl	panpan1.1		panPan2

SUN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	22,255,919 - 22,272,304 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	22,255,921 - 22,272,170 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	21,901,547 - 21,917,932 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	22,941,683 - 22,958,062 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	22,941,685 - 22,958,076 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	22,217,334 - 22,233,703 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	22,327,357 - 22,343,740 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	22,758,316 - 22,774,696 (-)	NCBI		UU_Cfam_GSD_1.0

Sun5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	171,255,168 - 171,270,723 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	19,686,894 - 19,701,946 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	19,686,894 - 19,701,946 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	36,508,100 - 36,528,298 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	36,508,569 - 36,528,052 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	41,445,512 - 41,465,061 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Sun5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	6,288,621 - 6,310,211 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624842	6,289,004 - 6,309,607 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	hemolymphoid system	nervous system
High
Medium
Low	14	2
Below cutoff	5	29

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008020778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008020785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000010568 ⟹ ENSCSAP00000008662

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	2	37,354,706 - 37,375,442 (-)	Ensembl

RefSeq Acc Id:

XM_008020778 ⟹ XP_008018969

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	2	37,354,675 - 37,376,019 (-)	NCBI
Vero_WHO_p1.0	NW_023666050	89,529,125 - 89,552,733 (+)	NCBI

Sequence:

show sequence

AGCTCAGGCAATCCACCCGCCTCAGCCTCCCAAAATACTAGGATTACAGGCATCAACCACCGCA
CCCAGCCAAAAAGTAGAACTTTATTAAAACAACAACACATGCCATGTATTTTGTGTTATGCACA
ATGTCCACCAGTGAGAAGCTCAGCATTACAAAATGCATTCACAGGCAACCTAAGAGGGTGAAAA
ACCTGGGAAGCTTGGGGCAGGAAGGGGTCTAGGGAACACAGAAAAGCATGGTTGGGTTACTGGA
GCTTCAGCTCTCACCCCTGTCTAGCTCCTGAGACCCCGGCATGGCCCTTCCTGTCTTGATGCCT
CAATTTCCCCATCTTAAAAAAGGAAAGTGGGTCACAATGGCTTCCTCTGGGGGAGGTTCTAGAG
CCAAGCTGGAGACTAGCCCCCACCCCCTGTCCCTTCACTCACCTGCTCTGTGAGGTCACAGTGC
CAACTGCTCCACTGATCCTGGTAGATTCCACTGGCACTTTTCAGAGGACATTCAGAGGCATCAG
CCACTTCCTTCTCACCAGCTCCCAGAGATCCCCGCCTCCATCCCCAGTCCTAGAGAAGGATATC
GATGCCACGGTCCTCAAGGAGCCCTGGGGACCCAGGTGCCCCACTCGAAGATGTGGCCCACAAT
CCCAGACCCCGGAGGATTGCCCAGCGAGGCCGGAACACCAGCAGAATAGTGGAGGACACCTCCT
CAAACATGAATGACAACTTCCTGTTGCCTGTGCGCATCAATGCCCAAGCCCTAGGCCTGACTCA
GTGCATGCTGGGATGTGTGTCCTGGTTCACCTGTTTTGCTTGCTCCCTGAGAACTCAGGCCCAG
CAGGTTCTGTTCAACATGTGCAGATGCAAGCTGCTGTGCCAGAAGCTCATGGAGAAGACAGGCA
TTCTGCTCCTCTGTGCTTTCGGATTCTGGATGTTTTCTATTCACTTACCATCGAAAATGAAAGT
CTGGCAGGATGACAGCATAAATGGTCCACTGCAGAGCTTGAGGTTGTACCAGGAGAAGGTGAGA
CATCACAGTGGGGAAATCCAGGACCTCCGAGGTAGCATGAACCTGCTCATTGCCAAGCTCCAGG
AGATGGAAGCCATGTCTGATGAGCAAAAAGTGGCCCAGAAAATAATGAAGATGATACATGGCGA
TTACATCGAAAAGCCAGACTTTGCCCTGAAGTCTACAGGGGCCAGCATTGACTTTGAGCACACA
TCAGCCACCTATAACCATGAGAAGGCCCACTCCTACTGGAACTGGATCCAGCTGTGGAACTACG
CACAGCCCCCAGACGTGATCCTCGAGCCCAACGTGACACCTGGCAATTGCTGGGCCTTTGAGGG
TAACCGCGGCCAGGTGACCATCCAATTGGCTCAGAAGGTCTACCTGTCCAACCTCACACTGCAG
CACATCCCCAAGACCATCTCGCCATCAGGCAGCCTGGACACTGCCCCCAAGGACTTCGTCATCT
ACGGCATGGAGGGCTCCCCCAAGGAGGAGGTGTTCCTGGGGGCATTTCAGTTTCAGCCAGAAAG
CATCATCCAGATGTTCCCACTCCAGAACCAGCCGACCCGGGCTTTCGGTGCGGTCAAGGTGAAG
ATCTCAAGCAACTGGGGGAACCCAGCCTTCACTTGCCTGTACCGTGTGCGAGTGCATGGCTCTG
TGGCCCCGCCCGGAGAGCAAGCTTCACCAGAACCCCTACCCTGAGAGAGATTAAAATTTATTCT
TCACCCCCAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008018969	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000008662
	ENSCSAP00000008662.1

RefSeq Acc Id:	XP_008018969 ⟸ XM_008020778
- UniProtKB:	A0A0D9RJ73 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000008662 ⟸ ENSCSAT00000010568

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012504	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010568.1	UniProtKB/TrEMBL
Gene3D-CATH	Galactose-binding domain-like	UniProtKB/TrEMBL
InterPro	SUN1-5	UniProtKB/TrEMBL
	SUN_dom	UniProtKB/TrEMBL
KEGG Report	csab:103248421	UniProtKB/TrEMBL
NCBI Gene	SUN5	ENTREZGENE
PANTHER	PTHR12911	UniProtKB/TrEMBL
	PTHR12911:SF44	UniProtKB/TrEMBL
Pfam	Sad1_UNC	UniProtKB/TrEMBL
PROSITE	SUN	UniProtKB/TrEMBL
UniProt	A0A0D9RJ73	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM