LNP1 (leukemia NUP98 fusion partner 1)

Gene: LNP1 (leukemia NUP98 fusion partner 1) Chlorocebus sabaeus

Analyze

Symbol:

LNP1

Name:

leukemia NUP98 fusion partner 1

RGD ID:

18522045

Description:

ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	80,425,528 - 80,477,294 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	80,425,176 - 80,452,524 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	86,094,999 - 86,145,645 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ISO)

References

Genomics

Comparative Map Data

LNP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	80,425,528 - 80,477,294 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	80,425,176 - 80,452,524 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	86,094,999 - 86,145,645 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LNP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	100,401,539 - 100,456,319 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	100,401,532 - 100,456,319 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	100,120,383 - 100,175,163 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	101,602,727 - 101,657,860 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	98,510,896 - 98,566,085 (+)	NCBI		Celera
Cytogenetic Map	3	q12.2	NCBI
HuRef	3	97,487,844 - 97,542,810 (+)	NCBI		HuRef
CHM1_1	3	100,083,067 - 100,138,188 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	103,106,541 - 103,161,683 (+)	NCBI		T2T-CHM13v2.0

Lnp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	56,734,454 - 56,748,600 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	56,734,707 - 56,748,424 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	56,914,100 - 56,928,188 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	56,914,344 - 56,928,061 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	56,914,457 - 56,928,177 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	16	57,246,788 - 57,263,330 (-)	NCBI		Celera
Cytogenetic Map	16	C1.1	NCBI
cM Map	16	34.22	NCBI

Lnp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	57,129,986 - 57,149,594 (+)	NCBI		GRCr8
mRatBN7.2	11	43,660,873 - 43,678,727 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	43,654,705 - 43,678,721 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	11	45,888,088 - 45,905,102 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	45,888,221 - 45,904,848 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	49,073,493 - 49,090,846 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	44,602,062 - 44,618,748 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	11	43,428,496 - 43,452,490 (+)	NCBI		Celera
Cytogenetic Map	11	q12	NCBI

Lnp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	1,929,228 - 1,958,093 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	1,929,092 - 1,956,878 (+)	NCBI	ChiLan1.0	ChiLan1.0

LNP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	98,343,879 - 98,399,536 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	98,348,661 - 98,404,318 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	97,497,304 - 97,552,052 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	104,177,210 - 104,231,901 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	104,177,210 - 104,231,901 (+)	Ensembl	panpan1.1		panPan2

LNP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	7,009,073 - 7,051,387 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	7,033,873 - 7,051,377 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	7,164,576 - 7,206,843 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	7,148,068 - 7,191,597 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	7,172,835 - 7,191,587 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	7,035,633 - 7,077,838 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	7,107,185 - 7,126,253 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	7,413,874 - 7,456,194 (+)	NCBI		UU_Cfam_GSD_1.0

Lnp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	149,836,490 - 149,845,991 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936630	2,733,087 - 2,743,968 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936630	2,734,384 - 2,743,887 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LNP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	158,540,833 - 158,559,617 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	158,540,866 - 158,559,786 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	168,236,097 - 168,255,754 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	7		20
Low	29	15	40
Below cutoff		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007986054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007986055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007986056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000004101 ⟹ ENSCSAP00000002363

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	22	80,425,176 - 80,452,524 (-)	Ensembl

RefSeq Acc Id:

XM_007986055 ⟹ XP_007984246

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	80,425,528 - 80,477,294 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	86,095,001 - 86,145,645 (+)	NCBI

Sequence:

show sequence

ATTTCGGATCCAGTTTTCCCGTTATAGCCACGTTGGCACCTCTTGAATCTCTGTGGCCGTTAGC
TCGGTTTTCTGCCCGCGTGCCCGGGAAACCAACGGATTGGAAGGACTTTTAAAGATGTATGAGG
AAAGAGCTCACTGCTGAAGAAGGCTGCTGCATCACTGAACTTCCTACCACTAACACAGCCAGAT
TTTAGTTTGGACGAATTTGAGGTTATAGGGGAGGTTAGCGATGGCAGAAGACTAGGTGGAAATG
GCACTTCTAGGTTGGCTGCAGTCGAAACGGTTTGAGCGTGGTCGCTGTGGCTTATCGTCGCCAC
CAGTTACGAAAGCGATGACTTCTACGTTGTTATTCTTAAACTGAGTTGGTAGAAATGCGAAGCG
TCAGGGTTCCCGCCGGCTTCGAGCCTTTCTTGACGTGTTTGTATCTTGAGCTGATTTCTACGTG
ACACACCAGCCCACATCTCGCTCAGTGCAACAACATCACAGTAGAGCTACAAAAAGATTGAAAG
GAGATATTTTATCAAGTGGCACCAAAATGGATTGATTAAAATAGAATGGCCTGATTTGAAAGAA
TTTCAGGATCACCGGTTTCTCCTGCTTCATGGGCAGGCCTTCAATATTTGGCATCACCTTTACA
TGGAGCACAAAGATGATGATGATGATGATGTGTCTTTTGCCAAATGGATGAGCAGCTTCTGGGG
CCACAGCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAACGCCACCGACCACAAGCCACCAGT
CACAGGAAGACCTCCCTGCCTTGCCCACTTCCTGTGCTTCCCAGAATTCCATCATCTGACCGCC
ATCCTAGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCATCTGATTGTCTTCCTAG
AAGGCATTCTCATGAGGACCAAGAATTTCGATGCCGTAGCCACGTGCGGGATTACGGAAAATAC
TCAGAGGATGGGTCATTCAAGGAGCCACTGGAATCAAAAGGCAGATCCCATTCCAAAACTGAGA
AATTTTCGGAGTCCTTTGAACGACAGCTGTGCTTTAGAACCAAACGTTCGGCCTCTTTGGGACC
TGAAAGCAGAAAGGAGAGAAATGAAAGAGAATGCCTGAGGGTGGAGATAAAATCCCGAAAGAAA
GCAGAGGAAGAAAGGAGCTCTAGGAAAGAAGAACATGGAGAAGCACACATGGCTCCCCTGTTTG
AAAAAGGGCCTGAATAATACTCTGCTTCCGCCTCATGACATCAGATGCTAGTTTTGGTTTTTTT
CTTTGAGCCCTAATTCACCATTTCAGGATGTGGATGGGGGCAGGGTTGGGGGTAAAAACAGCTA
TAAAAAGCAACTGCAGATGCTGAGTGACTGCAGTGGGCAGGGTATGTAGCTGCTCCAAGATGAC
TTGCATCATACCCCAATTACTGCTGGCATCTTAGTTGAGAGTATATTCTGCTTGGTTGCCTTTT
TATGGGAATAAAGAGAATAAAAGGTATTTTAATAGAATAAAGAAAAATTTGAAAACGTAATACA
AGGTATTTAAAGAGCCACCCACGTAGCTTCACCAACCCTTCTTACACATCAACTCACAAATCAT
CTTAAATAAAAGTCATTGGTATGACTCTTGAGTTTA

hide sequence

RefSeq Acc Id:

XM_007986056 ⟹ XP_007984247

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	80,425,528 - 80,477,294 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	86,094,999 - 86,145,645 (+)	NCBI

Sequence:

show sequence

ATTTCGGATCCAGTTTTCCCGTTATAGCCACGTTGGCACCTCTTGAATCTCTGTGGCCGTTAGC
TCGGTTTTCTGCCCGCGTGCCCGGGAAACCAACGGATTGGAAGGACTTTTAAAGATGTATGAGG
AAAGAGCTCACTGCTGAAGAAGGCTGCTGCATCACTGAACTTCCTACCACTAACACAGCCAGAT
TTTAGTTTGGACGAATTTGAGGTTATAGGGGAGGTTAGCGATGGCAGAAGACTAGGTGGAAATG
GCACTTCTAGGTTGGCTGCAGTCGAAACGGTTTGAGCGTGGTCGCTGTGGCTTATCGTCGCCAC
CAGTTACGAAAGCGATGACTTCTACGTTGTTATTCTTAAACTGAGTTGGTAGAAATGCGAAGCG
TCAGGGTTCCCGCCGGCTTCGAGCCTTTCTTGACGTGTTTGTATCTTGAGCTGATTTCTACGTG
ACACACCAGCCCACATCTCGCTCAGGGGCAGGCCTTCAATATTTGGCATCACCTTTACATGGAG
CACAAAGATGATGATGATGATGATGTGTCTTTTGCCAAATGGATGAGCAGCTTCTGGGGCCACA
GCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAACGCCACCGACCACAAGCCACCAGTCACAG
GAAGACCTCCCTGCCTTGCCCACTTCCTGTGCTTCCCAGAATTCCATCATCTGACCGCCATCCT
AGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCATCTGATTGTCTTCCTAGAAGGC
ATTCTCATGAGGACCAAGAATTTCGATGCCGTAGCCACGTGCGGGATTACGGAAAATACTCAGA
GGATGGGTCATTCAAGGAGCCACTGGAATCAAAAGGCAGATCCCATTCCAAAACTGAGAAATTT
TCGGAGTCCTTTGAACGACAGCTGTGCTTTAGAACCAAACGTTCGGCCTCTTTGGGACCTGAAA
GCAGAAAGGAGAGAAATGAAAGAGAATGCCTGAGGGTGGAGATAAAATCCCGAAAGAAAGCAGA
GGAAGAAAGGAGCTCTAGGAAAGAAGAACATGGAGAAGCACACATGGCTCCCCTGTTTGAAAAA
GGGCCTGAATAATACTCTGCTTCCGCCTCATGACATCAGATGCTAGTTTTGGTTTTTTTCTTTG
AGCCCTAATTCACCATTTCAGGATGTGGATGGGGGCAGGGTTGGGGGTAAAAACAGCTATAAAA
AGCAACTGCAGATGCTGAGTGACTGCAGTGGGCAGGGTATGTAGCTGCTCCAAGATGACTTGCA
TCATACCCCAATTACTGCTGGCATCTTAGTTGAGAGTATATTCTGCTTGGTTGCCTTTTTATGG
GAATAAAGAGAATAAAAGGTATTTTAATAGAATAAAGAAAAATTTGAAAACGTAATACAAGGTA
TTTAAAGAGCCACCCACGTAGCTTCACCAACCCTTCTTACACATCAACTCACAAATCATCTTAA
ATAAAAGTCATTGGTATGACTCTTGAGTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007984246	(Get FASTA)	NCBI Sequence Viewer
	XP_007984247	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000002363.1

RefSeq Acc Id:	XP_007984247 ⟸ XM_007986056
- UniProtKB:	A0A0D9R174 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007984246 ⟸ XM_007986055
- UniProtKB:	A0A0D9R174 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000002363 ⟸ ENSCSAT00000004101

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000006065	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000004101.1	UniProtKB/TrEMBL
InterPro	LNP1	UniProtKB/TrEMBL
KEGG Report	csab:103228454	UniProtKB/TrEMBL
NCBI Gene	LNP1	ENTREZGENE
PANTHER	LEUKEMIA NUP98 FUSION PARTNER 1	UniProtKB/TrEMBL
	PTHR35667	UniProtKB/TrEMBL
Pfam	LNP1	UniProtKB/TrEMBL
UniProt	A0A0D9R174	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar