ZNF415 (zinc finger protein 415) - Rat Genome Database

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Gene: ZNF415 (zinc finger protein 415) Chlorocebus sabaeus
Analyze
Symbol: ZNF415
Name: zinc finger protein 415
RGD ID: 18512830
Description: INVOLVED IN regulation of gene expression (inferred); FOUND IN fibrillar center (inferred); microtubule cytoskeleton (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1645,849,447 - 45,871,767 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl645,847,493 - 45,857,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607325,953,024 - 25,977,254 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF415
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1645,849,447 - 45,871,767 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl645,847,493 - 45,857,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607325,953,024 - 25,977,254 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF415
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,107,879 - 53,132,910 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,107,879 - 53,133,077 (-)EnsemblGRCh38hg38GRCh38
GRCh371953,611,132 - 53,636,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361958,302,944 - 58,327,957 (-)NCBINCBI36Build 36hg18NCBI36
Build 341958,302,944 - 58,327,957NCBI
Celera1950,658,663 - 50,683,384 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1949,935,622 - 49,960,144 (-)NCBIHuRef
CHM1_11953,612,901 - 53,637,963 (-)NCBICHM1_1
T2T-CHM13v2.01956,190,480 - 56,215,200 (-)NCBIT2T-CHM13v2.0
ZNF415
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22059,137,545 - 59,162,014 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,055,934 - 61,080,429 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01950,030,677 - 50,055,166 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11958,902,930 - 58,927,004 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1958,902,930 - 58,927,002 (-)Ensemblpanpan1.1panPan2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 35 15 60
Below cutoff 1 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000016577   ⟹   ENSCSAP00000016082
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl645,847,493 - 45,857,594 (-)Ensembl
RefSeq Acc Id: XM_037991441   ⟹   XP_037847369
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607325,953,024 - 25,977,254 (-)NCBI
RefSeq Acc Id: XM_037991442   ⟹   XP_037847370
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607325,953,024 - 25,972,195 (-)NCBI
RefSeq Acc Id: XM_037991443   ⟹   XP_037847371
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607325,953,024 - 25,976,080 (-)NCBI
RefSeq Acc Id: XM_037991444   ⟹   XP_037847372
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607325,953,024 - 25,977,249 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037847369 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847370 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847371 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847372 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016082.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000016082   ⟸   ENSCSAT00000016577
RefSeq Acc Id: XP_037847369   ⟸   XM_037991441
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037847372   ⟸   XM_037991444
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037847371   ⟸   XM_037991443
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037847370   ⟸   XM_037991442
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016577.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103235182 UniProtKB/TrEMBL
NCBI Gene ZNF415 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 711 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9S5E3_CHLSB UniProtKB/TrEMBL