PRM1 (protamine 1) - Rat Genome Database

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Gene: PRM1 (protamine 1) Chlorocebus sabaeus
Analyze
Symbol: PRM1
Name: protamine 1
RGD ID: 18512223
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN nucleus organization (ortholog); spermatid development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm protamine P1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,758,057 - 10,758,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606819,405,264 - 19,405,904 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,758,057 - 10,758,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606819,405,264 - 19,405,904 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,280,841 - 11,281,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,280,841 - 11,281,330 (-)EnsemblGRCh38hg38GRCh38
GRCh371611,374,698 - 11,375,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,282,194 - 11,282,693 (-)NCBINCBI36Build 36hg18NCBI36
Build 341611,282,199 - 11,282,685NCBI
Celera1611,544,077 - 11,544,576 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1611,292,416 - 11,292,915 (-)NCBIHuRef
CHM1_11611,374,599 - 11,375,098 (-)NCBICHM1_1
T2T-CHM13v2.01611,317,056 - 11,317,545 (-)NCBIT2T-CHM13v2.0
Prm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391610,614,196 - 10,614,687 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1610,614,190 - 10,623,703 (-)EnsemblGRCm39 Ensembl
GRCm381610,796,332 - 10,796,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,796,326 - 10,805,839 (-)EnsemblGRCm38mm10GRCm38
MGSCv371610,796,425 - 10,796,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,709,910 - 10,710,401 (-)NCBIMGSCv36mm8
Celera1611,423,762 - 11,424,253 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.87NCBI
Prm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8105,378,740 - 5,379,235 (+)NCBIGRCr8
mRatBN7.2104,871,817 - 4,872,312 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx109,568,484 - 9,568,730 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0109,089,600 - 9,089,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0104,727,881 - 4,728,127 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0104,945,995 - 4,946,241 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl104,945,911 - 4,946,397 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,772,481 - 3,772,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,808,354 - 4,808,600 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera103,893,505 - 3,893,751 (+)NCBICelera
Cytogenetic Map10q11NCBI
PRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21811,829,110 - 11,831,298 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11615,599,576 - 15,601,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,222,779 - 10,223,289 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11611,444,606 - 11,445,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,861,087 - 31,861,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,861,087 - 31,861,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2332,650,583 - 32,651,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 10 11
Below cutoff 6 8 17

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007985834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007985834   ⟹   XP_007984025
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1510,758,057 - 10,758,574 (-)NCBI
Vero_WHO_p1.0NW_02366606819,405,264 - 19,405,904 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007984025 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004634
  ENSCSAP00000004634.1
Reference Protein Sequences
RefSeq Acc Id: XP_007984025   ⟸   XM_007985834
- UniProtKB: A0A0D9R7P5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008377 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006429.1 UniProtKB/TrEMBL
InterPro Protamine_P1 UniProtKB/TrEMBL
KEGG Report csab:103228324 UniProtKB/TrEMBL
NCBI Gene PRM1 ENTREZGENE
Pfam Protamine_P1 UniProtKB/TrEMBL
PROSITE PROTAMINE_P1 UniProtKB/TrEMBL
UniProt A0A0D9R7P5 ENTREZGENE, UniProtKB/TrEMBL