POLG2 (DNA polymerase gamma 2, accessory subunit) - Rat Genome Database

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Gene: POLG2 (DNA polymerase gamma 2, accessory subunit) Chlorocebus sabaeus
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Symbol: POLG2
Name: DNA polymerase gamma 2, accessory subunit
RGD ID: 18502412
Description: ENCODES a protein that exhibits DNA polymerase binding (inferred); DNA polymerase processivity factor activity (inferred); DNA-directed DNA polymerase activity (inferred); INVOLVED IN in utero embryonic development (ortholog); mitochondrial DNA metabolic process (ortholog); mitochondrial DNA replication (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 4 (ortholog); chronic progressive external ophthalmoplegia (ortholog); FOUND IN gamma DNA polymerase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA polymerase subunit gamma-2, mitochondrial; polymerase (DNA directed), gamma 2, accessory subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11656,773,867 - 56,794,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1656,776,330 - 56,794,654 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607727,382,675 - 27,402,719 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
POLG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11656,773,867 - 56,794,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1656,776,330 - 56,794,654 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607727,382,675 - 27,402,719 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
POLG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381764,477,785 - 64,497,054 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1764,477,785 - 64,497,054 (-)EnsemblGRCh38hg38GRCh38
GRCh371762,473,902 - 62,493,172 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361759,904,364 - 59,923,631 (-)NCBINCBI36Build 36hg18NCBI36
Build 341759,904,364 - 59,923,604NCBI
Celera1756,943,739 - 56,963,326 (-)NCBICelera
Cytogenetic Map17q23.3NCBI
HuRef1757,923,123 - 57,942,249 (-)NCBIHuRef
CHM1_11762,537,826 - 62,557,108 (-)NCBICHM1_1
T2T-CHM13v2.01765,347,539 - 65,366,810 (-)NCBIT2T-CHM13v2.0
Polg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,659,030 - 106,670,363 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11106,659,079 - 106,670,363 (-)EnsemblGRCm39 Ensembl
GRCm3811106,768,204 - 106,779,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11106,768,253 - 106,779,537 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711106,629,518 - 106,640,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611106,584,396 - 106,595,532 (-)NCBIMGSCv36mm8
Celera11118,499,425 - 118,510,748 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.01NCBI
Polg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81092,212,303 - 92,222,849 (-)NCBIGRCr8
mRatBN7.21091,712,586 - 91,723,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1091,712,586 - 91,723,008 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1096,768,140 - 96,778,559 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01096,231,315 - 96,241,734 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01091,634,688 - 91,645,111 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01094,968,836 - 94,979,259 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1094,968,836 - 94,979,259 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01094,714,851 - 94,724,959 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41096,120,205 - 96,130,221 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11096,134,677 - 96,144,202 (-)NCBI
Celera1090,379,006 - 90,389,432 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Polg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554787,376,712 - 7,396,647 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554787,376,240 - 7,396,647 (+)NCBIChiLan1.0ChiLan1.0
POLG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21980,664,361 - 80,686,934 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11785,484,050 - 85,505,152 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01758,574,442 - 58,593,915 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11763,667,246 - 63,686,503 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1763,667,246 - 63,686,503 (-)Ensemblpanpan1.1panPan2
POLG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1912,258,188 - 12,298,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl912,269,990 - 12,298,272 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha913,154,464 - 13,194,209 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0913,921,112 - 13,960,915 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl913,920,748 - 13,960,815 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1912,867,260 - 12,907,024 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0914,625,825 - 14,665,713 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0914,627,009 - 14,666,887 (+)NCBIUU_Cfam_GSD_1.0
Polg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560214,190,704 - 14,206,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365414,988,368 - 5,003,922 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365414,988,469 - 5,004,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1214,582,544 - 14,601,570 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11214,582,075 - 14,601,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Polg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624870177,239 - 204,552 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624870136,060 - 204,486 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1 1
Low 35 20 59
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008012078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000002044   ⟹   ENSCSAP00000000373
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1656,776,330 - 56,794,654 (+)Ensembl
RefSeq Acc Id: XM_008012078   ⟹   XP_008010269
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11656,773,867 - 56,794,571 (+)NCBI
Vero_WHO_p1.0NW_02366607727,382,675 - 27,402,719 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008010269 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000373.1
RefSeq Acc Id: XP_008010269   ⟸   XM_008012078
- UniProtKB: A0A0D9QVI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000373   ⟸   ENSCSAT00000002044


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004013 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002044.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.800 UniProtKB/TrEMBL
InterPro aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  Anticodon-bd UniProtKB/TrEMBL
  Anticodon-bd_dom_sf UniProtKB/TrEMBL
  Gly-tRNA_synthase/POLG2 UniProtKB/TrEMBL
  POLG2_C UniProtKB/TrEMBL
KEGG Report csab:103243194 UniProtKB/TrEMBL
NCBI Gene POLG2 ENTREZGENE
PANTHER PTHR10745 UniProtKB/TrEMBL
  PTHR10745:SF8 UniProtKB/TrEMBL
Pfam HGTP_anticodon UniProtKB/TrEMBL
Superfamily-SCOP Class II aaRS ABD-related UniProtKB/TrEMBL
  SSF55681 UniProtKB/TrEMBL
UniProt A0A0D9QVI4 ENTREZGENE, UniProtKB/TrEMBL