LOC103235947 (cystatin-B-like) - Rat Genome Database

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Pathways
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Gene: LOC103235947 (cystatin-B-like) Chlorocebus sabaeus
Analyze
Symbol: LOC103235947
Name: cystatin-B-like
RGD ID: 18497739
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1736,584,416 - 36,584,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603715,333,499 - 15,334,064 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 12 18 24
Below cutoff 14 2 21

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007999208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007999208   ⟹   XP_007997399
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1736,584,416 - 36,584,782 (+)NCBI
Vero_WHO_p1.0NW_02366603715,333,499 - 15,334,064 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007997399 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017590.1
Reference Protein Sequences
RefSeq Acc Id: XP_007997399   ⟸   XM_007999208
- UniProtKB: A0A0D9S9Q1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000412 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018123.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cystatin_dom UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
  Prot_inh_stefin UniProtKB/TrEMBL
KEGG Report csab:103235947 UniProtKB/TrEMBL
NCBI Gene LOC103235947 ENTREZGENE
PANTHER CYSTATIN-B UniProtKB/TrEMBL
  PTHR11414 UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
PRINTS STEFINA UniProtKB/TrEMBL
SMART SM00043 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A0D9S9Q1 ENTREZGENE, UniProtKB/TrEMBL