GPX6 (glutathione peroxidase 6) - Rat Genome Database

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Gene: GPX6 (glutathione peroxidase 6) Chlorocebus sabaeus
Analyze
Symbol: GPX6
Name: glutathione peroxidase 6
RGD ID: 18470559
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); Huntington's disease (ortholog); megacolon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,046,748 - 44,058,881 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604428,204,307 - 28,215,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPX6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,046,748 - 44,058,881 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604428,204,307 - 28,215,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GPX6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,503,296 - 28,515,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,503,296 - 28,528,215 (-)EnsemblGRCh38hg38GRCh38
GRCh37628,471,073 - 28,483,570 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,579,052 - 28,591,549 (-)NCBINCBI36Build 36hg18NCBI36
Build 34628,579,051 - 28,591,549NCBI
Celera630,077,501 - 30,089,997 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,277,455 - 28,289,954 (-)NCBIHuRef
CHM1_1628,473,472 - 28,485,969 (-)NCBICHM1_1
T2T-CHM13v2.0628,374,721 - 28,387,222 (-)NCBIT2T-CHM13v2.0
Gpx6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,479,635 - 21,503,795 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,496,295 - 21,503,794 (+)EnsemblGRCm39 Ensembl
GRCm381321,295,465 - 21,319,625 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,312,125 - 21,319,624 (+)EnsemblGRCm38mm10GRCm38
MGSCv371321,404,072 - 21,411,493 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,319,715 - 21,327,085 (+)NCBIMGSCv36mm8
Celera1321,579,151 - 21,586,567 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.74NCBI
Gpx6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81748,104,197 - 48,111,816 (-)NCBIGRCr8
mRatBN7.21743,408,472 - 43,416,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,408,472 - 43,416,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,465,782 - 45,473,456 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01750,224,885 - 50,232,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,715,478 - 44,723,148 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,439,268 - 45,446,952 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,439,268 - 45,446,907 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,020,331 - 58,027,779 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41751,063,379 - 51,068,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11751,066,219 - 51,070,899 (-)NCBI
Celera1753,062,670 - 53,070,210 (+)NCBICelera
Cytogenetic Map17q11NCBI
GPX6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2543,129,197 - 43,143,584 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1639,130,146 - 39,144,534 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,317,217 - 28,330,024 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,988,742 - 29,000,265 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,988,742 - 29,000,265 (-)Ensemblpanpan1.1panPan2
GPX6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,620,843 - 25,630,288 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,620,111 - 25,631,062 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,480,125 - 25,489,572 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,919,111 - 25,928,723 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,918,379 - 25,929,103 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,583,022 - 25,592,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,638,367 - 25,647,972 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,107,104 - 27,116,712 (-)NCBIUU_Cfam_GSD_1.0
Gpx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,905,318 - 28,913,519 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936914535,324 - 543,114 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936914535,324 - 543,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPX6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,256,038 - 22,267,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,256,013 - 22,267,992 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,199,978 - 24,211,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007973344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007973344   ⟹   XP_007971535
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11744,046,748 - 44,058,881 (+)NCBI
Vero_WHO_p1.0NW_02366604428,204,307 - 28,215,400 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007971535 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007971535   ⟸   XM_007973344


Additional Information

Database Acc Id Source(s)
NCBI Gene GPX6 ENTREZGENE