HNRNPU (heterogeneous nuclear ribonucleoprotein U)

Gene: HNRNPU (heterogeneous nuclear ribonucleoprotein U) Chlorocebus sabaeus

Analyze

Symbol:

HNRNPU

Name:

heterogeneous nuclear ribonucleoprotein U

RGD ID:

18468338

Description:

ENCODES a protein that exhibits poly(G) binding (ortholog); promoter-specific chromatin binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN cardiac muscle cell development (ortholog); cellular response to dexamethasone stimulus (ortholog); mRNA metabolic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); colorectal cancer (ortholog); developmental and epileptic encephalopathy 1 (ortholog); FOUND IN CRD-mediated mRNA stability complex (ortholog); dendrite (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,879,532 - 81,890,684 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	81,878,111 - 81,890,701 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	84,093,092 - 84,115,743 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

colorectal cancer (ISO)

developmental and epileptic encephalopathy 1 (ISO)

developmental and epileptic encephalopathy 54 (ISO)

epilepsy (ISO)

gastrointestinal stromal tumor (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Myoclonic Epilepsies (ISO)

Neurodevelopmental Disorders (ISO)

parathyroid carcinoma (ISO)

Senior-Loken Syndrome 7 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive thermogenesis (IEA)

cardiac muscle cell development (IEA,ISO)

cellular response to dexamethasone stimulus (ISO)

cellular response to glucocorticoid stimulus (IEA)

cellular response to leukemia inhibitory factor (IEA)

circadian regulation of gene expression (IEA)

CRD-mediated mRNA stabilization (IEA)

dendritic transport of messenger ribonucleoprotein complex (IEA)

dosage compensation by inactivation of X chromosome (IEA)

maintenance of protein location in nucleus (IEA)

mRNA metabolic process (IEA,ISO)

mRNA stabilization (IEA)

negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA)

negative regulation of stem cell differentiation (IEA)

negative regulation of telomere maintenance via telomerase (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

negative regulation of transcription elongation by RNA polymerase II (IEA)

positive regulation of attachment of mitotic spindle microtubules to kinetochore (IEA)

positive regulation of brown fat cell differentiation (IEA)

positive regulation of cytoplasmic translation (IEA)

positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity (ISO)

positive regulation of gene expression (ISO)

positive regulation of stem cell proliferation (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

protein localization to spindle microtubule (IEA)

regulation of alternative mRNA splicing, via spliceosome (IEA)

regulation of chromatin organization (IEA)

regulation of mitotic cell cycle (IEA)

regulation of mitotic spindle assembly (IEA)

RNA localization to chromatin (IEA)

Cellular Component

catalytic step 2 spliceosome (IEA)

cell surface (IEA)

centrosome (IEA)

CRD-mediated mRNA stability complex (IEA,ISO)

cytoplasmic ribonucleoprotein granule (IEA)

cytosol (IEA)

dendrite (ISO)

dendrite cytoplasm (IEA)

inactive sex chromosome (IEA)

kinetochore (IEA)

membrane (IEA)

midbody (IEA)

mitotic spindle (IEA)

mitotic spindle microtubule (IEA)

mitotic spindle midzone (IEA)

nuclear chromosome (IEA)

nuclear matrix (IEA)

nuclear speck (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA)

protein-containing complex (IEA)

ribonucleoprotein complex (IEA,ISO)

RNA polymerase II transcription regulator complex (IEA,ISO)

telomerase holoenzyme complex (IEA)

Molecular Function

actin binding (IEA)

ATP binding (IEA)

chromatin binding (IEA)

chromatin DNA binding (IEA)

DNA binding (IEA)

double-stranded DNA binding (IEA)

double-stranded RNA binding (IEA)

identical protein binding (IEA)

lncRNA binding (IEA)

mRNA 3'-UTR binding (IEA)

poly(A) binding (IEA)

poly(C) RNA binding (IEA)

poly(G) binding (IEA,ISO)

pre-mRNA binding (IEA)

promoter-specific chromatin binding (IEA,ISO)

protein binding (ISO)

protein-containing complex binding (IEA)

ribonucleoprotein complex binding (IEA,ISO)

RNA binding (IEA,ISO)

RNA polymerase II C-terminal domain binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II complex binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

single-stranded DNA binding (IEA)

single-stranded RNA binding (IEA)

snRNA binding (IEA)

telomerase RNA binding (IEA)

TFIIH-class transcription factor complex binding (IEA)

transcription corepressor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

HNRNPU
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,879,532 - 81,890,684 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	81,878,111 - 81,890,701 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	84,093,092 - 84,115,743 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

HNRNPU
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	244,850,297 - 244,864,543 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	244,840,638 - 244,864,560 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	245,013,599 - 245,027,845 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	243,080,225 - 243,094,450 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	241,343,003 - 241,353,868	NCBI
Celera	1	218,303,553 - 218,317,021 (-)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	215,396,765 - 215,410,903 (-)	NCBI		HuRef
CHM1_1	1	246,285,948 - 246,300,167 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	244,266,602 - 244,280,849 (-)	NCBI		T2T-CHM13v2.0

Hnrnpu
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	178,148,673 - 178,170,063 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	178,148,673 - 178,165,362 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	178,321,108 - 178,338,891 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	178,321,108 - 178,337,797 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	180,258,431 - 180,267,915 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	180,165,990 - 180,174,387 (-)	NCBI		MGSCv36	mm8
Celera	1	185,387,923 - 185,397,431 (-)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	83.16	NCBI

Hnrnpu
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,609,791 - 92,618,580 (-)	NCBI		GRCr8
mRatBN7.2	13	90,069,058 - 90,086,905 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	90,074,181 - 90,086,588 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	92,582,994 - 92,591,782 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,983,136 - 93,991,924 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,164,719 - 91,173,509 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,222,093 - 96,238,845 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,225,912 - 96,238,572 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	100,663,218 - 100,679,960 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	93,978,865 - 93,987,654 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	94,168,061 - 94,176,568 (-)	NCBI
Celera	13	89,636,544 - 89,645,333 (-)	NCBI		Celera
Cytogenetic Map	13	q25	NCBI

Hnrnpu
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	8,000,269 - 8,021,554 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	8,000,269 - 8,021,554 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPU
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	4,286,070 - 4,300,191 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	4,511,584 - 4,522,898 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	220,450,218 - 220,461,412 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	225,830,663 - 225,842,031 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	225,817,899 - 225,842,031 (-)	Ensembl	panpan1.1		panPan2

HNRNPU
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	35,832,956 - 35,842,898 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	35,833,988 - 35,843,754 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	35,302,229 - 35,316,897 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	35,653,977 - 35,672,359 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	35,655,401 - 35,672,356 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	35,493,577 - 35,507,810 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	35,509,582 - 35,522,877 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	35,777,999 - 35,788,402 (-)	NCBI		UU_Cfam_GSD_1.0

Hnrnpu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	48,725,125 - 48,767,809 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936526	6,014,745 - 6,022,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPU
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	17,477,902 - 17,497,030 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	17,475,266 - 17,497,060 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	19,942,586 - 19,951,287 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Hnrnpu
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	14,756,100 - 14,765,832 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624771	14,756,088 - 14,766,106 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	20	60
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007990009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005236215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000007286 ⟹ ENSCSAP00000005471

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	81,878,111 - 81,890,701 (-)	Ensembl

RefSeq Acc Id:

XM_007990009 ⟹ XP_007988200

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	81,879,532 - 81,890,684 (-)	NCBI
Vero_WHO_p1.0	NW_023666055	84,104,481 - 84,115,743 (-)	NCBI

Sequence:

show sequence

CGCTCGCGCCAGGCGAGTCTCCGCGTCTCCCTCGCGAACTCGGTGAAAGGAATTGGCGCCGTTC
GACACCAGGCGGATCCGCTCTGCAGCACGACCCCATCTCCAGCCGCAGCCGCAGCCGCCGCCCG
GGCCGAGGAGCAGCCGCAGCAGCCGCCACCAGTGGCCGAGTGAGCGGAGCCGAGTTTGAGGCAG
CGCCTAGCGGTGAATCGGGGCCCTCACCATGAGTTCCTCGCCTGTTAATGTAAAAAAGCTGAAG
GTGTCGGAGCTGAAAGAGGAGCTCAAGAAGCGACGCCTTTCTGACAAGGGTCTCAAGGCCGAGC
TCATGGAGCGACTCCAGGCCGCGCTGGACGACGAGGAGGCCGGGGGCCGCCCCGCCATGGAGCC
CGGGAACGGCAGCCTAGACCTGGGCGGGGATTCCGCCGGGCGCTCGGGAGCAGGCCTCGAGCAG
GAGGCCGCGGTCGGCGGCGATGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGGAATCTCCG
CCCTGGACGGCGACCAGATGGAGCTAGGAGAGGAGAACGGGGCCGCGGGGGCGGCCGACTCGGG
CCCGATGGAGGAGGAGGAGGCCGCCTCGGAAGACGAGAACGGCGACGATCAGGGTTTCCAGGAA
GGGGAAGATGAGCTCGGGGACGAAGAGGAAGGCGCGGGCGACGAGAACGGGCACGGGGAGCAGC
AGCCTCAACCGCCGGCGACGCAGCAGCAACAGACCCAACAGCAGCGCGGGGCCGCCAAGGAGGC
CGCGGGGAAGAGCAGCGGCCCCACCTCGCTGTTCGCGGTGACGGTGGCGCCGCCCGGGGCGAGG
CAGGGCCAGCAGCAGGCGGGAGGTAAGAAGAAGGCGGAAGGCGGCGGAGGCGGCGGTCGCCCCG
GGGCTCCGGCGGCGGGGGACGGCAAAACAGAACAGAAAGGCGGAGATAAAAAGAGGGGTGTTAA
AAGACCACGAGAAGATCATGGCCGTGGATATTTTGAGTACATTGAAGAGAACAAGTATAGCAGA
GCCAAATCTCCTCAGCCACCTGTTGAAGAAGAAGATGAACACTTCGATGACACAGTGGTTTGTC
TTGATACTTATAATTGTGATCTACATTTTAAAATATCAAGAGATCGTCTCAGTGCTTCTTCCCT
TACAATGGAAAGTTTCGCTTTTCTTTGGGCTGGAGGAAGAGCATCTTATGGTGTGTCAAAAGGC
AAAGTGTGTTTTGAGATGAAGGTTACAGAGAAGATCCCAGTAAGGCATTTATATACAAAAGATA
TTGACATACATGAAGTTCGTATTGGCTGGTCACTAACTACAAGTGGAATGTTACTTGGTGAAGA
AGAATTTTCTTACGGGTATTCTCTAAAAGGAATAAAAACATGCAACTGTGAGACTGAAGATTAT
GGAGAAAAGTTTGATGAAAATGATGTGATTACATGTTTTGCTAACTTTGAAAGTGATGAAGTAG
AACTCTCCTATGCTAAGAATGGACAAGATCTTGGCATTGCTTTCAAAATCAGTAAGGAAGTTCT
TGCTGGACGGCCACTCTTCCCGCATGTTCTCTGCCACAACTGTGCAGTTGAATTTAATTTTGGT
CAGAAGGAAAAGCCATATTTTCCAATACCTGAAGAGTATACTTTTATCCAGAATGTCCCCTTAG
AGGATCGAGTTAGAGGACCAAAGGGGCCTGAAGAGAAGAAAGATTGTGAAGTTGTGATGATGAT
TGGCTTGCCAGGAGCTGGAAAAACCACCTGGGTTACTAAGCATGCAGCGGAAAATCCAGGGAAA
TACAACATTCTTGGCACAAATACTATTATGGATAAAATGATGGTGGCAGGTTTTAAGAAGCAAA
TGGCAGATACGGGAAAACTGAACACACTGTTGCAGAGAGCCCCACAGTGTCTTGGGAAATTTAT
TGAGATTGCTGCCCGAAAGAAGCGAAATTTTATTCTGGATCAGACAAATGTGTCTGCTGCTGCC
CAGAGGAGAAAAATGTGCCTGTTCGCAGGCTTCCAGCGAAAAGCTGTTGTAGTGTGCCCAAAAG
ATGAAGACTATAAGCAAAGAACACAGAAGAAAGCAGAAGTAGAGGGGAAAGACCTACCAGAACA
TGCGGTCCTCAAAATGAAAGGAAACTTTACCCTCCCAGAGGTAGCTGAGTGCTTTGATGAAATA
ACCTATGTTGAACTTCAGAAGGAAGAAGCCCAAAAACTTTTGGAGCAATATAAGGAAGAAAGCA
AAAAGGCTCTTCCACCAGAAAAGAAACAGAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAG
TGGCAAGAACCAGTTTAACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGT
GGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAACATGCCAC
AGAGAGGTGGTGGTGGCGGTGGAAGCGGTGGAATCGGCTATCCATACCCTCGTGCTCCTGTGTT
TCCTGGCCGTGGTAGTTACTCAAACAGAGGGAACTACAACAGAGGTGGAATGCCCAACAGAGGG
AACTACAACCAGAACTTCAGAGGACGAGGAAACAATCGTGGCTACAAAAATCAATCTCAGGGCT
ACAACCAGTGGCAGCAGGGTCAATTCTGGGGTCAGAAGCCATGGAGTCAGCATTATCACCAAGG
ATATTATTGAATACCCAAATAAAACGAACTGATACATATTTCTCCAAAACCTTCACAAGAAGTC
GACTGTTTTCTTTAGTAGGCTAACTTTTTAAACATTCCACAAGAGGAAGTGCCTGCGGGTTCCT
TTTTTAGAAGCTTTGTGGGTTGATTTTTTTTCTTTTCTTTTTTGTACATTTTTAATTGCAGTTT
AAAAGTGAATCGTAAGAGAACCTCAGCATTGTGCACGATAAGAGAATGTGTCAGTATTTCAGGG
TTCTACATTTTATCTGTAAAATGTGACTTTTTTTTTTTTTATCACAACAGAAGTAAAATGTTGC
TTTGTACCTGGTGTCTTTTATTAAGAATTTACTCCCCCCGTTTCTCACAGAGAATAACAGTCGG
GAGTCATTGTCACAATATAATAGAAATGTTAGCAACCAGATTCATGTAAGGACTAAGTGGTCCT
CATGAATTGCATTAAGACTCTGTACTGCTCATATTACACTCCATCCTCTCTGTAGTTTGCTGGG
TAGTGGAGGGGGTAAGCTAAATCGTAGTTTCTGACAATAACTGGGAAGGATTTTTCTTAAATAA
CAATGGAATTGGTATAATTGGGATTGAAAACCAAAACTTGGAACTAAGATAGAGAAGATGGAGT
GTATGTAGAAGGGCTGTTAAAAATGTAAACCTTGGTTGCATTATTTGTGGAGGCTCAAACTTGT
GAAGGTTAAATACCATAATTTTTCCATTTGTTCTGCATTTTGATTCTGAAAAGAAAGCTGGCTT
TGCCCATTTCTTATTAAAAAAACTTGTTGTAAATCCAGTTGTCTAATGGGATCTATATGAAGTT
AGCCATGTCTGTATGCCCTTCTCCCACAAAATACTGTATAACTAGTGTGCTTGTAGTAGTTAAC
TCCACCATCTTTGTAAGCTAATGAAATTGTGAGTCACCCATTTATATCTTAATTTTTAATCATG
TCAGTTCTTGAATGGGTATCTCCTTAGCCTGCTGATTTCTTTTTCTTTCTAAAGAAAGTGGGTG
GAGAAATTAATTTAGACGTTTGTTTGCAATAAAAAGAATTCATTTTA

hide sequence

RefSeq Acc Id:

XM_007990010 ⟹ XP_007988201

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	81,879,532 - 81,890,684 (-)	NCBI
Vero_WHO_p1.0	NW_023666055	84,102,434 - 84,115,605 (-)	NCBI

Sequence:

show sequence

CGCTCGCGCCAGGCGAGTCTCCGCGTCTCCCTCGCGAACTCGGTGAAAGGAATTGGCGCCGTTC
GACACCAGGCGGATCCGCTCTGCAGCACGACCCCATCTCCAGCCGCAGCCGCAGCCGCCGCCCG
GGCCGAGGAGCAGCCGCAGCAGCCGCCACCAGTGGCCGAGTGAGCGGAGCCGAGTTTGAGGCAG
CGCCTAGCGGTGAATCGGGGCCCTCACCATGAGTTCCTCGCCTGTTAATGTAAAAAAGCTGAAG
GTGTCGGAGCTGAAAGAGGAGCTCAAGAAGCGACGCCTTTCTGACAAGGGTCTCAAGGCCGAGC
TCATGGAGCGACTCCAGGCCGCGCTGGACGACGAGGAGGCCGGGGGCCGCCCCGCCATGGAGCC
CGGGAACGGCAGCCTAGACCTGGGCGGGGATTCCGCCGGGCGCTCGGGAGCAGGCCTCGAGCAG
GAGGCCGCGGTCGGCGGCGATGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGGAATCTCCG
CCCTGGACGGCGACCAGATGGAGCTAGGAGAGGAGAACGGGGCCGCGGGGGCGGCCGACTCGGG
CCCGATGGAGGAGGAGGAGGCCGCCTCGGAAGACGAGAACGGCGACGATCAGGGTTTCCAGGAA
GGGGAAGATGAGCTCGGGGACGAAGAGGAAGGCGCGGGCGACGAGAACGGGCACGGGGAGCAGC
AGCCTCAACCGCCGGCGACGCAGCAGCAACAGACCCAACAGCAGCGCGGGGCCGCCAAGGAGGC
CGCGGGGAAGAGCAGCGGCCCCACCTCGCTGTTCGCGGTGACGGTGGCGCCGCCCGGGGCGAGG
CAGGGCCAGCAGCAGGCGGGAGGGGACGGCAAAACAGAACAGAAAGGCGGAGATAAAAAGAGGG
GTGTTAAAAGACCACGAGAAGATCATGGCCGTGGATATTTTGAGTACATTGAAGAGAACAAGTA
TAGCAGAGCCAAATCTCCTCAGCCACCTGTTGAAGAAGAAGATGAACACTTCGATGACACAGTG
GTTTGTCTTGATACTTATAATTGTGATCTACATTTTAAAATATCAAGAGATCGTCTCAGTGCTT
CTTCCCTTACAATGGAAAGTTTCGCTTTTCTTTGGGCTGGAGGAAGAGCATCTTATGGTGTGTC
AAAAGGCAAAGTGTGTTTTGAGATGAAGGTTACAGAGAAGATCCCAGTAAGGCATTTATATACA
AAAGATATTGACATACATGAAGTTCGTATTGGCTGGTCACTAACTACAAGTGGAATGTTACTTG
GTGAAGAAGAATTTTCTTACGGGTATTCTCTAAAAGGAATAAAAACATGCAACTGTGAGACTGA
AGATTATGGAGAAAAGTTTGATGAAAATGATGTGATTACATGTTTTGCTAACTTTGAAAGTGAT
GAAGTAGAACTCTCCTATGCTAAGAATGGACAAGATCTTGGCATTGCTTTCAAAATCAGTAAGG
AAGTTCTTGCTGGACGGCCACTCTTCCCGCATGTTCTCTGCCACAACTGTGCAGTTGAATTTAA
TTTTGGTCAGAAGGAAAAGCCATATTTTCCAATACCTGAAGAGTATACTTTTATCCAGAATGTC
CCCTTAGAGGATCGAGTTAGAGGACCAAAGGGGCCTGAAGAGAAGAAAGATTGTGAAGTTGTGA
TGATGATTGGCTTGCCAGGAGCTGGAAAAACCACCTGGGTTACTAAGCATGCAGCGGAAAATCC
AGGGAAATACAACATTCTTGGCACAAATACTATTATGGATAAAATGATGGTGGCAGGTTTTAAG
AAGCAAATGGCAGATACGGGAAAACTGAACACACTGTTGCAGAGAGCCCCACAGTGTCTTGGGA
AATTTATTGAGATTGCTGCCCGAAAGAAGCGAAATTTTATTCTGGATCAGACAAATGTGTCTGC
TGCTGCCCAGAGGAGAAAAATGTGCCTGTTCGCAGGCTTCCAGCGAAAAGCTGTTGTAGTGTGC
CCAAAAGATGAAGACTATAAGCAAAGAACACAGAAGAAAGCAGAAGTAGAGGGGAAAGACCTAC
CAGAACATGCGGTCCTCAAAATGAAAGGAAACTTTACCCTCCCAGAGGTAGCTGAGTGCTTTGA
TGAAATAACCTATGTTGAACTTCAGAAGGAAGAAGCCCAAAAACTTTTGGAGCAATATAAGGAA
GAAAGCAAAAAGGCTCTTCCACCAGAAAAGAAACAGAACACTGGCTCAAAGAAAAGCAATAAAA
ATAAGAGTGGCAAGAACCAGTTTAACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATAT
GCGTGGTGGAAATTTCAGAGGAGGAGCCCCTGGGAATCGTGGCGGATATAATAGGAGGGGCAAC
ATGCCACAGAGAGGTGGTGGTGGCGGTGGAAGCGGTGGAATCGGCTATCCATACCCTCGTGCTC
CTGTGTTTCCTGGCCGTGGTAGTTACTCAAACAGAGGGAACTACAACAGAGGTGGAATGCCCAA
CAGAGGGAACTACAACCAGAACTTCAGAGGACGAGGAAACAATCGTGGCTACAAAAATCAATCT
CAGGGCTACAACCAGTGGCAGCAGGGTCAATTCTGGGGTCAGAAGCCATGGAGTCAGCATTATC
ACCAAGGATATTATTGAATACCCAAATAAAACGAACTGATACATATTTCTCCAAAACCTTCACA
AGAAGTCGACTGTTTTCTTTAGTAGGCTAACTTTTTAAACATTCCACAAGAGGAAGTGCCTGCG
GGTTCCTTTTTTAGAAGCTTTGTGGGTTGATTTTTTTTCTTTTCTTTTTTGTACATTTTTAATT
GCAGTTTAAAAGTGAATCGTAAGAGAACCTCAGCATTGTGCACGATAAGAGAATGTGTCAGTAT
TTCAGGGTTCTACATTTTATCTGTAAAATGTGACTTTTTTTTTTTTTATCACAACAGAAGTAAA
ATGTTGCTTTGTACCTGGTGTCTTTTATTAAGAATTTACTCCCCCCGTTTCTCACAGAGAATAA
CAGTCGGGAGTCATTGTCACAATATAATAGAAATGTTAGCAACCAGATTCATGTAAGGACTAAG
TGGTCCTCATGAATTGCATTAAGACTCTGTACTGCTCATATTACACTCCATCCTCTCTGTAGTT
TGCTGGGTAGTGGAGGGGGTAAGCTAAATCGTAGTTTCTGACAATAACTGGGAAGGATTTTTCT
TAAATAACAATGGAATTGGTATAATTGGGATTGAAAACCAAAACTTGGAACTAAGATAGAGAAG
ATGGAGTGTATGTAGAAGGGCTGTTAAAAATGTAAACCTTGGTTGCATTATTTGTGGAGGCTCA
AACTTGTGAAGGTTAAATACCATAATTTTTCCATTTGTTCTGCATTTTGATTCTGAAAAGAAAG
CTGGCTTTGCCCATTTCTTATTAAAAAAACTTGTTGTAAATCCAGTTGTCTAATGGGATCTATA
TGAAGTTAGCCATGTCTGTATGCCCTTCTCCCACAAAATACTGTATAACTAGTGTGCTTGTAGT
AGTTAACTCCACCATCTTTGTAAGCTAATGAAATTGTGAGTCACCCATTTATATCTTAATTTTT
AATCATGTCAGTTCTTGAATGGGTATCTCCTTAGCCTGCTGATTTCTTTTTCTTTCTAAAGAAA
GTGGGTGGAGAAATTAATTTAGACGTTTGTTTGCAATAAAAAGAATTCATTTTA

hide sequence

RefSeq Acc Id:

XR_005236215

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	84,093,092 - 84,115,623 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007988200	(Get FASTA)	NCBI Sequence Viewer
	XP_007988201	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000005471
	ENSCSAP00000005471.1

RefSeq Acc Id:	XP_007988201 ⟸ XM_007990010
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RA32 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007988200 ⟸ XM_007990009
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSCSAP00000005471 ⟸ ENSCSAT00000007286

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000009219	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000007286.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.30	UniProtKB/TrEMBL
	2.60.120.920	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SAP_dom	UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/TrEMBL
	SPRY_hnRNP_U	UniProtKB/TrEMBL
NCBI Gene	HNRNPU	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	UniProtKB/TrEMBL
	PTHR12381:SF11	UniProtKB/TrEMBL
Pfam	AAA_33	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
SMART	SAP	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	SSF68906	UniProtKB/TrEMBL
UniProt	A0A0D9RA32	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations