LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated) - Rat Genome Database

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Gene: LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated) Chlorocebus sabaeus
Analyze
Symbol: LSM3
Name: LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
RGD ID: 18441692
Description: ENCODES a protein that exhibits U6 snRNA 3'-end binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); Lsm2-8 complex (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: U6 snRNA-associated Sm-like protein LSm3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,121,674 - 50,141,071 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041116,354,553 - 116,374,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LSM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,121,674 - 50,141,071 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041116,354,553 - 116,374,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LSM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,178,817 - 14,201,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,178,817 - 14,201,122 (+)EnsemblGRCh38hg38GRCh38
GRCh37314,220,317 - 14,242,622 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,195,341 - 14,214,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 34314,195,340 - 14,214,840NCBI
Celera314,158,457 - 14,178,097 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,155,207 - 14,174,845 (+)NCBIHuRef
CHM1_1314,170,613 - 14,190,252 (+)NCBICHM1_1
T2T-CHM13v2.0314,180,681 - 14,202,982 (+)NCBIT2T-CHM13v2.0
Lsm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,493,017 - 91,499,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,492,910 - 91,499,607 (+)EnsemblGRCm39 Ensembl
GRCm38691,516,035 - 91,522,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,515,928 - 91,522,625 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,466,029 - 91,472,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,481,539 - 91,488,124 (+)NCBIMGSCv36mm8
Celera693,409,326 - 93,415,908 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.58NCBI
Lsm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,578,185 - 125,584,429 (+)NCBIGRCr8
mRatBN7.24124,021,023 - 124,027,269 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4124,021,023 - 124,027,269 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,486,995 - 129,493,234 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,261,423 - 125,267,662 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,885,977 - 123,892,216 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,162,086 - 123,168,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,162,086 - 123,168,330 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,377,370 - 187,383,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,700,026 - 125,706,270 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,945,303 - 125,950,751 (+)NCBI
Celera4112,940,482 - 112,946,726 (+)NCBICelera
Cytogenetic Map4q34NCBI
Lsm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542916,968,490 - 16,977,517 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542916,968,490 - 16,977,517 (+)NCBIChiLan1.0ChiLan1.0
LSM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,156,329 - 14,225,193 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,161,091 - 14,229,955 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,097,035 - 14,165,942 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1314,437,497 - 14,456,727 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl314,437,497 - 14,456,726 (+)Ensemblpanpan1.1panPan2
LSM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1204,328,930 - 4,342,731 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl204,329,038 - 4,342,859 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha204,366,825 - 4,380,622 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0204,350,284 - 4,364,092 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl204,350,392 - 4,364,220 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1411,266,194 - 11,266,502 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,069,769 - 4,083,561 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0204,392,051 - 4,405,847 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0204,356,498 - 4,370,300 (+)NCBIUU_Cfam_GSD_1.0
Lsm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,762,653 - 18,769,706 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602140,004 - 147,035 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602140,014 - 147,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,336,907 - 70,348,651 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,339,685 - 70,349,802 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,737,428 - 77,746,329 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Lsm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248721,428,073 - 1,438,563 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248721,428,885 - 1,438,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007985313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007985313   ⟹   XP_007983504
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12250,121,674 - 50,141,071 (+)NCBI
Vero_WHO_p1.0NW_023666041116,354,553 - 116,374,034 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007983504 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007983504   ⟸   XM_007985313


Additional Information

Database Acc Id Source(s)
NCBI Gene LSM3 ENTREZGENE