PNMA5 (PNMA family member 5) - Rat Genome Database

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Gene: PNMA5 (PNMA family member 5) Chlorocebus sabaeus
Analyze
Symbol: PNMA5
Name: PNMA family member 5
RGD ID: 18428297
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN meiosis I (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN cell cortex (ortholog); meiotic spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paraneoplastic antigen-like protein 5; paraneoplastic Ma antigen family member 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X127,511,081 - 127,517,052 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX127,512,502 - 127,513,848 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606565,334,322 - 65,337,737 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
meiosis I  (ISO)

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PNMA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X127,511,081 - 127,517,052 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX127,512,502 - 127,513,848 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606565,334,322 - 65,337,737 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PNMA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X152,988,824 - 152,994,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX152,988,824 - 152,994,116 (-)EnsemblGRCh38hg38GRCh38
GRCh37X152,157,368 - 152,162,660 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X151,908,024 - 151,911,417 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X151,827,938 - 151,831,326NCBI
CeleraX152,491,524 - 152,496,827 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX140,957,736 - 140,961,176 (-)NCBIHuRef
CHM1_1X152,032,328 - 152,037,631 (-)NCBICHM1_1
T2T-CHM13v2.0X151,255,263 - 151,260,555 (-)NCBIT2T-CHM13v2.0
Pnma5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,077,587 - 72,083,315 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,077,587 - 72,080,709 (-)EnsemblGRCm39 Ensembl
GRCm38X73,033,981 - 73,039,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,033,981 - 73,037,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X70,279,327 - 70,282,442 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,279,322 - 70,282,442 (-)NCBIMGSCv36mm8
CeleraX63,958,163 - 63,961,281 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.29NCBI
Pnma5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,923,131 - 155,925,055 (-)NCBIGRCr8
mRatBN7.2X150,880,865 - 150,882,789 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,880,865 - 150,882,789 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,072,910 - 153,074,834 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X156,605,250 - 156,607,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,148,364 - 154,150,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X153,037,448 - 153,039,372 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX153,037,448 - 153,039,372 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,767,026 - 148,768,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,030,480 - 159,032,404 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1131,845,146 - 131,847,070 (-)NCBICelera
Cytogenetic MapXq37NCBI
PNMA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,053,179 - 153,059,368 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,056,782 - 153,062,686 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X142,564,200 - 142,566,785 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X152,483,324 - 152,487,740 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX152,483,930 - 152,485,276 (-)Ensemblpanpan1.1panPan2
Pnma5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,097,358 - 118,101,500 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936714155,618 - 157,563 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936714155,618 - 156,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNMA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX123,999,037 - 124,000,974 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X123,998,935 - 124,001,201 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 9
Low 1 11 14
Below cutoff 10 6 26

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000018009   ⟹   ENSCSAP00000017478
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX127,512,502 - 127,513,848 (-)Ensembl
RefSeq Acc Id: XM_007993029   ⟹   XP_007991220
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X127,511,081 - 127,515,136 (-)NCBI
Vero_WHO_p1.0NW_02366606565,334,322 - 65,337,737 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007993030   ⟹   XP_007991221
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X127,511,081 - 127,515,136 (-)NCBI
Vero_WHO_p1.0NW_02366606565,334,322 - 65,337,737 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007991220 (Get FASTA)   NCBI Sequence Viewer  
  XP_007991221 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017478.1
Reference Protein Sequences
RefSeq Acc Id: XP_007991220   ⟸   XM_007993029
- UniProtKB: A0A0D9S9D9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007991221   ⟸   XM_007993030
- UniProtKB: A0A0D9S9D9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017478   ⟸   ENSCSAT00000018009


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000526 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018009.1 UniProtKB/TrEMBL
InterPro PNMA UniProtKB/TrEMBL
  PNMA_C UniProtKB/TrEMBL
  PNMA_N UniProtKB/TrEMBL
KEGG Report csab:103232769 UniProtKB/TrEMBL
NCBI Gene PNMA5 ENTREZGENE
PANTHER PTHR23095 UniProtKB/TrEMBL
  PTHR23095:SF4 UniProtKB/TrEMBL
Pfam PNMA UniProtKB/TrEMBL
  PNMA_N UniProtKB/TrEMBL
UniProt A0A0D9S9D9 ENTREZGENE, UniProtKB/TrEMBL