CDK17 (cyclin dependent kinase 17) - Rat Genome Database

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Gene: CDK17 (cyclin dependent kinase 17) Chlorocebus sabaeus
Analyze
Symbol: CDK17
Name: cyclin dependent kinase 17
RGD ID: 18419378
Description: ENCODES a protein that exhibits ATP binding (inferred); cyclin-dependent protein serine/threonine kinase activity (inferred); protein kinase activity (inferred); INVOLVED IN regulation of cell cycle (inferred); ASSOCIATED WITH multiple sclerosis (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-dependent kinase 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11191,641,917 - 91,757,925 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1191,640,374 - 91,757,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037153,369,630 - 153,485,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDK17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11191,641,917 - 91,757,925 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1191,640,374 - 91,757,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037153,369,630 - 153,485,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDK17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381296,278,225 - 96,400,439 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1296,278,261 - 96,400,480 (-)EnsemblGRCh38hg38GRCh38
GRCh371296,672,003 - 96,794,217 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361295,196,171 - 95,318,354 (-)NCBINCBI36Build 36hg18NCBI36
Build 341295,174,507 - 95,296,691NCBI
Celera1296,338,255 - 96,460,459 (-)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1293,733,889 - 93,856,707 (-)NCBIHuRef
CHM1_11296,637,404 - 96,759,699 (-)NCBICHM1_1
T2T-CHM13v2.01296,252,431 - 96,374,639 (-)NCBIT2T-CHM13v2.0
Cdk17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391092,996,492 - 93,086,956 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1092,996,737 - 93,102,933 (+)EnsemblGRCm39 Ensembl
GRCm381093,160,876 - 93,251,094 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1093,160,875 - 93,267,071 (+)EnsemblGRCm38mm10GRCm38
MGSCv371092,623,621 - 92,704,087 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361092,638,099 - 92,696,882 (+)NCBIMGSCv36mm8
Celera1095,144,250 - 95,226,301 (+)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1047.89NCBI
Cdk17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8729,570,982 - 29,677,613 (+)NCBIGRCr8
mRatBN7.2727,683,890 - 27,765,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl727,683,890 - 27,764,910 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx729,674,165 - 29,752,120 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0731,836,421 - 31,914,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0731,624,146 - 31,702,002 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0734,001,506 - 34,088,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl734,001,506 - 34,079,616 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0734,066,669 - 34,146,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4730,194,242 - 30,272,352 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera724,787,187 - 24,864,980 (+)NCBICelera
Cytogenetic Map7q13NCBI
Cdk17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540532,565,193 - 32,608,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540532,565,193 - 32,608,388 (-)NCBIChiLan1.0ChiLan1.0
CDK17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210104,347,113 - 104,463,155 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112104,343,499 - 104,459,545 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01293,864,941 - 93,980,914 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11297,284,763 - 97,398,800 (-)NCBIpanpan1.1PanPan1.1panPan2
CDK17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11536,020,839 - 36,068,863 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1536,023,519 - 36,076,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1536,407,522 - 36,517,466 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01536,687,325 - 36,797,317 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1536,686,530 - 36,797,619 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11535,959,224 - 36,069,395 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01536,054,139 - 36,164,035 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01536,317,719 - 36,427,697 (-)NCBIUU_Cfam_GSD_1.0
Cdk17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494523,825,901 - 23,917,690 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650712,316,510 - 12,399,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650712,317,746 - 12,409,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl587,179,615 - 87,295,167 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1587,180,132 - 87,282,391 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2591,460,942 - 91,501,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cdk17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475010,964,010 - 11,052,189 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 8 6 48
Low 28 14 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000001601   ⟹   ENSCSAP00000014478
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1191,640,374 - 91,757,876 (-)Ensembl
RefSeq Acc Id: XM_008004314   ⟹   XP_008002505
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11191,641,917 - 91,757,925 (-)NCBI
Vero_WHO_p1.0NW_023666037153,369,630 - 153,485,837 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008002505 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014478
  ENSCSAP00000014478.1
Reference Protein Sequences
RefSeq Acc Id: XP_008002505   ⟸   XM_008004314
- UniProtKB: A0A0D9S0T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000014478   ⟸   ENSCSAT00000001601


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003570 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001601.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene CDK17 ENTREZGENE
PANTHER CELL DIVISION PROTEIN KINASE UniProtKB/TrEMBL
  CYCLIN-DEPENDENT KINASE 17 UniProtKB/TrEMBL
Pfam Haspin_kinase UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0D9S0T9 ENTREZGENE, UniProtKB/TrEMBL