ADGRD1 (adhesion G protein-coupled receptor D1) - Rat Genome Database

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Gene: ADGRD1 (adhesion G protein-coupled receptor D1) Chlorocebus sabaeus
Analyze
Symbol: ADGRD1
Name: adhesion G protein-coupled receptor D1
RGD ID: 18393630
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (inferred); cell surface receptor signaling pathway (inferred); G protein-coupled receptor signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (inferred); membrane (inferred); nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adhesion G-protein coupled receptor D1; probable G-protein coupled receptor 133
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111126,342,228 - 126,539,633 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11126,343,515 - 126,537,315 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037118,493,828 - 118,679,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADGRD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111126,342,228 - 126,539,633 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11126,343,515 - 126,537,315 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037118,493,828 - 118,679,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ADGRD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812130,953,907 - 131,141,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12130,953,907 - 131,141,469 (+)EnsemblGRCh38hg38GRCh38
GRCh3712131,438,452 - 131,626,014 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612130,004,790 - 130,189,786 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412129,963,716 - 130,148,713NCBI
Celera12131,051,949 - 131,239,316 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12128,420,616 - 128,608,491 (+)NCBIHuRef
CHM1_112131,259,305 - 131,446,861 (+)NCBICHM1_1
T2T-CHM13v2.012130,993,251 - 131,181,371 (+)NCBIT2T-CHM13v2.0
Adgrd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,173,741 - 129,281,663 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,173,814 - 129,281,663 (+)EnsemblGRCm39 Ensembl
GRCm385129,096,750 - 129,204,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,096,750 - 129,204,599 (+)EnsemblGRCm38mm10GRCm38
MGSCv375129,602,625 - 129,710,474 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365129,411,458 - 129,519,307 (+)NCBIMGSCv36mm8
Celera5126,132,426 - 126,249,048 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.99NCBI
Adgrd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,124,981 - 33,239,778 (-)NCBIGRCr8
mRatBN7.21227,488,908 - 27,603,714 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,488,908 - 27,603,696 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01231,134,806 - 31,249,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1231,136,741 - 31,249,118 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,062,021 - 33,176,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,566,102 - 28,658,141 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1229,184,868 - 29,299,574 (-)NCBICelera
Cytogenetic Map12q13NCBI
Adgrd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554821,089,008 - 1,173,633 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554821,091,081 - 1,173,087 (-)NCBIChiLan1.0ChiLan1.0
ADGRD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210139,024,588 - 139,212,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112139,021,152 - 139,209,389 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012128,578,498 - 128,766,463 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112132,773,848 - 132,955,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12132,773,848 - 132,955,258 (+)Ensemblpanpan1.1panPan2
ADGRD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,255,524 - 1,378,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,257,415 - 1,377,394 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,456,102 - 1,578,574 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0261,501,632 - 1,624,035 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl261,501,632 - 1,623,687 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,438,073 - 1,560,385 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0261,534,718 - 1,657,257 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,441,986 - 1,564,501 (-)NCBIUU_Cfam_GSD_1.0
Adgrd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,890,422 - 122,992,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366601,730,432 - 1,831,118 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366601,728,331 - 1,831,088 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1424,059,019 - 24,241,176 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11424,059,667 - 24,241,270 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21425,517,697 - 25,654,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Adgrd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,326,851 - 27,411,931 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474727,326,800 - 27,411,768 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 18
Low 34 17 42
Below cutoff 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000016642   ⟹   ENSCSAP00000016144
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl11126,343,515 - 126,537,315 (+)Ensembl
RefSeq Acc Id: XM_037987267   ⟹   XP_037843195
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037118,493,828 - 118,679,020 (-)NCBI
RefSeq Acc Id: XM_037987271   ⟹   XP_037843199
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037118,493,828 - 118,679,653 (-)NCBI
RefSeq Acc Id: XM_037987274   ⟹   XP_037843202
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037118,493,828 - 118,679,020 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037843195 (Get FASTA)   NCBI Sequence Viewer  
  XP_037843199 (Get FASTA)   NCBI Sequence Viewer  
  XP_037843202 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016144.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000016144   ⟸   ENSCSAT00000016642
RefSeq Acc Id: XP_037843199   ⟸   XM_037987271
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S5K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843202   ⟸   XM_037987274
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S5K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843195   ⟸   XM_037987267
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S5K5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001899 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016642.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  Pentraxin-related UniProtKB/TrEMBL
KEGG Report csab:103239411 UniProtKB/TrEMBL
NCBI Gene ADGRD1 ENTREZGENE
PANTHER ADHESION G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  ADHESION G-PROTEIN COUPLED RECEPTOR D1 UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  Laminin_G_3 UniProtKB/TrEMBL
PRINTS GPCRSECRETIN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  PTX_2 UniProtKB/TrEMBL
SMART GPS UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A0D9S5K5 ENTREZGENE, UniProtKB/TrEMBL