THYN1 (thymocyte nuclear protein 1)

Gene: THYN1 (thymocyte nuclear protein 1) Chlorocebus sabaeus

Analyze

Symbol:

THYN1

Name:

thymocyte nuclear protein 1

RGD ID:

18380717

Description:

ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Experimental Liver Cirrhosis (ortholog); Isobutyryl-CoA Dehydrogenase Deficiency (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	125,308,232 - 125,313,553 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	731,010 - 736,452 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 11, Partial Trisomy 11q (ISO)

Experimental Liver Cirrhosis (ISO)

Isobutyryl-CoA Dehydrogenase Deficiency (ISO)

Jacobsen Syndrome (ISO)

Prostatic Neoplasms (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

THYN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	125,308,232 - 125,313,553 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	731,010 - 736,452 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

THYN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	134,248,282 - 134,253,352 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	134,248,279 - 134,253,370 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	134,118,176 - 134,123,246 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	133,623,383 - 133,628,470 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	131,291,036 - 131,296,123 (-)	NCBI		Celera
Cytogenetic Map	11	q25	NCBI
HuRef	11	130,072,934 - 130,078,021 (-)	NCBI		HuRef
CHM1_1	11	134,004,909 - 134,009,996 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	134,290,127 - 134,295,197 (-)	NCBI		T2T-CHM13v2.0

Thyn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	26,910,950 - 26,918,632 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	26,911,006 - 26,918,632 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	26,999,642 - 27,007,336 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	26,999,710 - 27,007,336 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	26,807,262 - 26,814,919 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	26,749,168 - 26,756,780 (+)	NCBI		MGSCv36	mm8
Celera	9	24,257,858 - 24,265,515 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	12.06	NCBI

Thyn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,665,614 - 33,674,593 (+)	NCBI		GRCr8
mRatBN7.2	8	25,406,563 - 25,415,445 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,406,500 - 25,415,445 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	29,448,526 - 29,457,408 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,742,824 - 27,751,706 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,622,821 - 25,631,701 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	28,045,093 - 28,053,974 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	28,045,093 - 28,054,040 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	28,064,823 - 28,073,704 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	8	26,894,403 - 26,903,284 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

Thyn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	35,061,874 - 35,067,352 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	35,061,874 - 35,067,631 (-)	NCBI	ChiLan1.0	ChiLan1.0

THYN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	134,973,015 - 134,978,114 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	136,072,201 - 136,077,297 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	129,101,422 - 129,106,521 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	132,958,850 - 132,963,927 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	132,958,850 - 132,963,911 (-)	Ensembl	panpan1.1		panPan2

THYN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	992,126 - 999,609 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	993,705 - 999,597 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	1,113,214 - 1,119,427 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	949,494 - 955,705 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	949,604 - 955,655 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	982,706 - 988,908 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	982,880 - 989,086 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	1,020,810 - 1,027,022 (+)	NCBI		UU_Cfam_GSD_1.0

Thyn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	116,001,021 - 116,011,924 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936684	1,591,270 - 1,597,609 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936684	1,591,158 - 1,601,833 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THYN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	60,802,928 - 60,807,409 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	60,802,925 - 60,807,404 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	67,487,439 - 67,490,210 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Thyn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624812	8,805,196 - 8,810,582 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624812	8,805,196 - 8,810,559 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008021580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008021580 ⟹ XP_008019771

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	125,308,232 - 125,313,553 (-)	NCBI
Vero_WHO_p1.0	NW_023666043	731,048 - 736,452 (+)	NCBI

Sequence:

show sequence

ACTTTATCATCTAGATTATCCATTCAGCTAATCCTCATAATTAGCAAGGATAACAAGGTAACAC
AAGGCTTACTTACATTCACCCAACAGAAGTGTCTCTGTGGAGCCACTTCCCAGTGAACTGCATA
CTGAGAGAGGGGTCCCTGGATGAGGACCAAGCAAAGAAGCGAGAAGAGTTTAGGGGCAGGTTAT
GCGAGACGGAAATGGCGCAGATAACGGAGGGAAGGATTTGAGGGGCTCAACACAGTGTCTGTGT
TTCGCAAAAGTTGGAGACATTCTAGGCTGCCTCTCGTTGCCCCCATCTCGCTCTGCGCGGGTTT
TGGAGGACATTAGCATTCTTTCTTGTATCTCCGTTGATTCCAGAATCTTCTGCACTTCAGTCCC
CTGCAGGGTGACCATGTCGAGACCTCGGAAGAGGCTGGCTGGGACTTCTGGTTCAGACAAGGGA
CTCTCAGGAAAACGCACCAAAACTGAGAACTCAGGTGAGGCATTAGCTGAAGTGGAGGACTCCA
ACCCTCAGAAGACTTCAGCCACTAAAAACTGTGTGAAGAATCTAAGCAGCCACTGGCTGATGAA
GTCAGAGCCAGAGAGCCGACTAGAGAAAGGTGTAGATGTGAAGTTCAGCATTGAGGATCTCAAA
GCACAGCCCAAACAGACAACATGCTGGGATGGTGTTCGTAACTACCAGGCTCGGAACTTCCTTA
GAGCCATGAAGCTAGGAGAAGAAGCCTTCTTCTACCATAGCAACTGCAAAGAGCCAGGCATCGC
AGGACTTATGAAGATCGTGAAAGAGGCTTACCCAGACCACACACAGTTTGAGAAAAACAATCCC
CATTATGACCCATCTAGCAAAGAGGACAACCCTAAGTGGTCCATGGTGGATGTACAGTTTGTTC
GGATGATGAAGCGTTTCATTCCGCTGGCTGAGCTCAAATCCTATCATCAAGCTCACAAAGCTAC
TGGTGGCCCCTTAAAAAATATGACTCTCTTCAGTCGCCAGAGATTATCAATCCAACCCCTGACC
CAAGAAGAGTTTGATTTTGTTTTGAGCCTGGAGGAAAAGGAACCAAGTTAACTGAGATATTACT
GCTGGAATGGGCAAGAAATTACTCCAAGACAAAAGAAATTACTCCAAGACAAAAGAAATTACTC
CAAGACAAAGGAAATTACTCCAAGACAAAAGGAGGTGTGGGGGGGGCTTGTTATGCTCACCTGG
GCTTGTGTAGCTAAGTAGTTTTTGTGTACTTTTTTCAATAAAATAATATCAAAGTTGAAAAAC

hide sequence

RefSeq Acc Id:

XM_038004966 ⟹ XP_037860894

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	731,029 - 736,452 (+)	NCBI

RefSeq Acc Id:

XM_038004967 ⟹ XP_037860895

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	731,028 - 736,280 (+)	NCBI

RefSeq Acc Id:

XM_038004968 ⟹ XP_037860896

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	731,010 - 736,452 (+)	NCBI

RefSeq Acc Id:

XM_038004969 ⟹ XP_037860897

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	731,056 - 736,452 (+)	NCBI

RefSeq Acc Id:

XM_038004970 ⟹ XP_037860898

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	731,129 - 736,452 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008019771	(Get FASTA)	NCBI Sequence Viewer
	XP_037860894	(Get FASTA)	NCBI Sequence Viewer
	XP_037860895	(Get FASTA)	NCBI Sequence Viewer
	XP_037860896	(Get FASTA)	NCBI Sequence Viewer
	XP_037860897	(Get FASTA)	NCBI Sequence Viewer
	XP_037860898	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015917.1

RefSeq Acc Id:	XP_008019771 ⟸ XM_008021580
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037860896 ⟸ XM_038004968
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4X8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037860895 ⟸ XM_038004967
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S4X8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037860894 ⟸ XM_038004966
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4X8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037860897 ⟸ XM_038004969
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4X8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037860898 ⟸ XM_038004970
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4X8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002119	UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000134.1	UniProtKB/TrEMBL
Gene3D-CATH	ph1033 like domains	UniProtKB/TrEMBL
InterPro	EVE_domain	UniProtKB/TrEMBL
	PUA-like_sf	UniProtKB/TrEMBL
	THYN1-like_EVE	UniProtKB/TrEMBL
NCBI Gene	THYN1	ENTREZGENE
PANTHER	THYMOCYTE NUCLEAR PROTEIN 1	UniProtKB/TrEMBL
	THYMOCYTE NUCLEAR PROTEIN 1	UniProtKB/TrEMBL
Pfam	EVE	UniProtKB/TrEMBL
Superfamily-SCOP	PUA domain-like	UniProtKB/TrEMBL
UniProt	A0A0D9S4X8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD