RILPL2 (Rab interacting lysosomal protein like 2)

Gene: RILPL2 (Rab interacting lysosomal protein like 2) Chlorocebus sabaeus

Analyze

Symbol:

RILPL2

Name:

Rab interacting lysosomal protein like 2

RGD ID:

18364699

Description:

ENCODES a protein that exhibits identical protein binding (inferred); protein dimerization activity (inferred); INVOLVED IN epithelial cell morphogenesis (inferred); protein transport (inferred); protein transport from ciliary membrane to plasma membrane (inferred); FOUND IN centrosome (inferred); cilium (inferred); cytosol (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RILP-like protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	118,748,165 - 118,769,540 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	118,747,886 - 118,769,301 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	126,513,244 - 126,534,491 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

epithelial cell morphogenesis (IEA)

protein transport (IEA)

protein transport from ciliary membrane to plasma membrane (IEA)

Cellular Component

centrosome (IEA)

cilium (IEA)

cytosol (IEA)

membrane (IEA)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

protein dimerization activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RILPL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	118,748,165 - 118,769,540 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	118,747,886 - 118,769,301 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	126,513,244 - 126,534,491 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RILPL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	123,409,306 - 123,436,684 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	123,415,039 - 123,436,684 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	123,899,586 - 123,921,231 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	122,465,889 - 122,487,217 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	123,492,620 - 123,513,952 (-)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	120,861,083 - 120,882,433 (-)	NCBI		HuRef
CHM1_1	12	123,714,676 - 123,736,013 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	123,405,896 - 123,433,259 (-)	NCBI		T2T-CHM13v2.0

Rilpl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,601,328 - 124,616,298 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,601,328 - 124,616,429 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	124,463,265 - 124,478,235 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	124,463,265 - 124,478,366 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	124,913,274 - 124,928,244 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	124,723,883 - 124,738,853 (-)	NCBI		MGSCv36	mm8
Celera	5	121,536,695 - 121,551,551 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	63.6	NCBI

Rilpl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	37,786,877 - 37,798,412 (+)	NCBI		GRCr8
mRatBN7.2	12	32,125,908 - 32,137,426 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,125,886 - 32,137,418 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	33,304,729 - 33,316,215 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	33,916,060 - 33,927,543 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	32,967,928 - 32,979,413 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,544,918 - 37,556,453 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,544,918 - 37,556,453 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	39,415,025 - 39,426,666 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	33,238,328 - 33,250,549 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	33,101,715 - 33,113,937 (+)	NCBI
Celera	12	33,815,933 - 33,826,268 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

Rilpl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,470,537 - 5,485,353 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	5,470,965 - 5,482,600 (+)	NCBI	ChiLan1.0	ChiLan1.0

RILPL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	131,502,891 - 131,524,438 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	131,499,268 - 131,520,815 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	121,013,042 - 121,034,931 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	125,241,775 - 125,263,693 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	125,241,775 - 125,263,690 (-)	Ensembl	panpan1.1		panPan2

RILPL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	6,145,571 - 6,168,750 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	6,145,937 - 6,168,625 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,308,125 - 6,328,893 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,395,577 - 6,416,359 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,395,738 - 6,425,114 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,329,024 - 6,349,793 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,422,041 - 6,442,854 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,374,617 - 6,395,392 (+)	NCBI		UU_Cfam_GSD_1.0

Rilpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	158,137,619 - 158,161,156 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,318,553 - 1,333,140 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,318,282 - 1,341,799 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RILPL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,477,281 - 29,523,166 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	29,478,135 - 29,522,923 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	31,187,509 - 31,211,475 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rilpl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	23,313,743 - 23,322,323 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	23,313,287 - 23,321,964 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	4	29
Low		16	31
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008005116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008005117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000000077 ⟹ ENSCSAP00000015973

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	11	118,747,886 - 118,769,301 (-)	Ensembl

RefSeq Acc Id:

XM_008005116 ⟹ XP_008003307

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	118,748,165 - 118,769,491 (-)	NCBI
Vero_WHO_p1.0	NW_023666037	126,513,244 - 126,534,491 (+)	NCBI

Sequence:

show sequence

GCGGGGCTCAGCGCGGCTCCTCCCCCGGGCTGCAACTGTTCCCAGGCTGGGGGGTTTGCCCTCA
CCCCTGAACTTTCCTCTTCTCGGACGCCCTCCTTTTCTGTTGTCCCTTCGCGCCCCAAACTACA
ACCTGGAGCGCACTCCCCCGCGCGGCCTGCAGCGGGGACGGTGCGCCAGGGGCGCAGGCCCTAG
AGTCGCGTGCGCGGCCCCTTTTTCCATCCGCCCCCCCGGGCCCACCCCCGGGCCGCGCTGATTG
GGCAGGTAGGGACTCTGCCCAGCGGAAAGTTTTGGGTGCCAGGAGGAAGTTCAACCTTTGGGAG
ACTCCAAGAGAGCAGCTCCGGGGTCGGCGGGGGTCTGGGTGGCCATGGAGGAGCCCCCTGTGCG
AGAAGAGGAAGAGGAAGAGGGAGAGGAGGACGATGAGAGGGATGAGACTGAGGACGAGGAGAGG
GACGAGGCTGGGCCCGAAGGGGCGCTGGGCAAGAGCCCCTTCCAGCTGACCGCCGAGGACGTGT
ATGACATCTCCTACCTGTTGGGCCGCGAACTTATGGCCCTGGGCAGCGACCCCCGCGTGACGCA
GCTGCAGTTCAAAGTCGTCCGCGTCCTGGAGATGCTGGAGGCACTAGTGAATGAGGGCAGCCTG
GCGCTGGAGGAGCTGAAGATGGAGAGGGACAACCTCAGGAAGGAGGTGGAGGGGCTGCGGAGAC
AGGACCCTCCGACCAGCGGGGAGGTGAACCTGAGCCCAAACAAAATGGTGGTTGACTTGACAGA
TCCCAACCGACCCCGCTTCACTCTGCAGGAGCTAAGGGACGTGCTGCAGGAACGCAACAAACTC
AAGTCACAGCTCCTGGTGGTGCAGGAAGAGCTGCAGTGCTACAAGAGTGGCCTGATTCCACCAA
GAGAAGGCCCAGGAGGAAGAAGAGAAAAAGATGCTGTGGTTACTAGGGCCAACAATGCTGGCAG
GAACAAGGAGGAGAAGACAATCATAAAAAAGCTGTTCTTTTTTCGATCGGGGAAACAGACCTAG
ATCCAAGGCCACAACTAAGGCTATGGCTCTGATTCCAGATGACAACCTTCCAAGATGCCTGGCA
AAGCCACCTCTCTGTGCCACACAGACACACTGAGCCTGCGTATTCATTTCCCCTTCAAAGCAGA
CTGAGGAGGGAGGAGACAAGGTTCTCTTGGCATTTCTCATTTCTCCCTGACTGCGGAACTAGAC
ACCCTTGAAGATTTGGCCTGGGCCAGTGAAGCAGAAATCAAGAAAAACAGAAGGGATGTGTGGG
GGTTGGGGCCCACTTCCTACTCCTACGTCAACCCCCAGGGCCTCCTGCATGCAGATGCATGTCC
TATTCATCTGCTCCCAGGGATGACCCTGGCCTTCAATGTTTAGCAGAAAGGAGAAAAGAAAGCA
GGAAAATGTGCTATTGATATTCCAGTGGTGACTTCACTGATATTTAGTGAATATTTGATTTAGC
CAACATGCCTTTCTTTATGTGATTTTGTATTAAAGTAAAATGACTTTTATACTTTCTATAGCTT
ATCCAGAGTGGTCTCTTAGTTATGATGGTATACATGGTGGTGTATATGTGTATATGTCACATAT
ATACATTTCATTGTATAATGAATCAATTGCATTCATTGAATCTAAGCAATAAACCATTATTTGG
TGTCACTA

hide sequence

RefSeq Acc Id:

XM_008005117 ⟹ XP_008003308

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	118,748,168 - 118,769,540 (-)	NCBI
Vero_WHO_p1.0	NW_023666037	126,513,244 - 126,534,491 (+)	NCBI

Sequence:

show sequence

GGAAACTCCGTCTCCACGGGAACGCGCCTCCCGGCAGCGGTCGCCAGGGGCGGGGCTCAGCGCG
GCTCCTCCCCCGGGCTGCAACTGTTCCCAGGCTGGGGGGTTTGCCCTCACCCCTGAACTTTCCT
CTTCTCGGACGCCCTCCTTTTCTGTTGTCCCTTCGCGCCCCAAACTACAACCTGGAGCGCACTC
CCCCGCGCGGCCTGCAGCGGGGACGGTGCGCCAGGGGCGCAGGCCCTAGAGTCGCGTGCGCGGC
CCCTTTTTCCATCCGCCCCCCCGGGCCCACCCCCGGGCCGCGCTGATTGGGCAGGTAGGGACTC
TGCCCAGCGGAAAGTTTTGGGTGCCAGGAGGAAGTTCAACCTTTGGGAGACTCCAAGAGAGCAG
CTCCGGGGTCGGCGGGGGTCTGGGTGGCCATGGAGGAGCCCCCTGTGCGAGAAGAGGAAGAGGA
AGAGGGAGAGGAGGACGATGAGAGGGATGAGACTGAGGACGAGGAGAGGGACGAGGCTGGGCCC
GAAGGGGCGCTGGGCAAGAGCCCCTTCCAGCTGACCGCCGAGGACGTGTATGACATCTCCTACC
TGTTGGGCCGCGAACTTATGGCCCTGGGCAGCGACCCCCGCGTGACGCAGCTGCAGTTCAAAGT
CGTCCGCGTCCTGGAGATGCTGGAGGCACTAGTGAATGAGGGCAGCCTGGCGCTGGAGGAGCTG
AAGATGGAGAGGGACAACCTCAGGAAGGAGGTGGAGGGGCTGCGGAGACAGGACCCTCCGACCA
GCGGGGAGGTGAACCTGAGCCCAAACAAAATGGTGGTTGACTTGACAGATCCCAACCGACCCCG
CTTCACTCTGCAGGAGCTAAGGGACGTGCTGCAGGAACGCAACAAACTCAAGTCACAGCTCCTG
GTGGTGCAGGAAGAGCTGCAGTGCTACAAGAGGTTCTTTTTTCGATCGGGGAAACAGACCTAGA
TCCAAGGCCACAACTAAGGCTATGGCTCTGATTCCAGATGACAACCTTCCAAGATGCCTGGCAA
AGCCACCTCTCTGTGCCACACAGACACACTGAGCCTGCGTATTCATTTCCCCTTCAAAGCAGAC
TGAGGAGGGAGGAGACAAGGTTCTCTTGGCATTTCTCATTTCTCCCTGACTGCGGAACTAGACA
CCCTTGAAGATTTGGCCTGGGCCAGTGAAGCAGAAATCAAGAAAAACAGAAGGGATGTGTGGGG
GTTGGGGCCCACTTCCTACTCCTACGTCAACCCCCAGGGCCTCCTGCATGCAGATGCATGTCCT
ATTCATCTGCTCCCAGGGATGACCCTGGCCTTCAATGTTTAGCAGAAAGGAGAAAAGAAAGCAG
GAAAATGTGCTATTGATATTCCAGTGGTGACTTCACTGATATTTAGTGAATATTTGATTTAGCC
AACATGCCTTTCTTTATGTGATTTTGTATTAAAGTAAAATGACTTTTATACTTTCTATAGCTTA
TCCAGAGTGGTCTCTTAGTTATGATGGTATACATGGTGGTGTATATGTGTATATGTCACATATA
TACATTTCATTGTATAATGAATCAATTGCATTCATTGAATCTAAGCAATAAACCATTATTTGGT
GTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008003307	(Get FASTA)	NCBI Sequence Viewer
	XP_008003308	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015973
	ENSCSAP00000015973.1

RefSeq Acc Id:	XP_008003307 ⟸ XM_008005116
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S534 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008003308 ⟸ XM_008005117
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCSAP00000015973 ⟸ ENSCSAT00000000077

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002062	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000077.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.1770	UniProtKB/TrEMBL
	6.10.230.10	UniProtKB/TrEMBL
InterPro	RH1	UniProtKB/TrEMBL
	RH2	UniProtKB/TrEMBL
	RILP_dimer	UniProtKB/TrEMBL
KEGG Report	csab:103239329	UniProtKB/TrEMBL
NCBI Gene	RILPL2	ENTREZGENE
Pfam	RILP	UniProtKB/TrEMBL
PROSITE	RH1	UniProtKB/TrEMBL
	RH2	UniProtKB/TrEMBL
Superfamily-SCOP	RILP dimerisation region	UniProtKB/TrEMBL
UniProt	A0A0D9S534	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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