CENATAC (centrosomal AT-AC splicing factor)

Gene: CENATAC (centrosomal AT-AC splicing factor) Chlorocebus sabaeus

Analyze

Symbol:

CENATAC

Name:

centrosomal AT-AC splicing factor

RGD ID:

18363981

Description:

INVOLVED IN chromosome separation (ortholog); mRNA splicing, via spliceosome (ortholog); negative regulation of centrosome duplication (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN centrosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CCDC84; coiled-coil domain containing 84; coiled-coil domain-containing protein 84

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,371,873 - 110,386,921 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	15,647,483 - 15,662,234 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CD3epsilon deficiency (ISO)

Chromosome 11, Partial Trisomy 11q (ISO)

Dwarfism (ISO)

glycogen storage disease Ib (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

inflammatory bowel disease 28 (ISO)

isolated microphthalmia 5 (ISO)

long QT syndrome 10 (ISO)

Mosaic Variegated Aneuploidy Syndrome 4 (ISO)

RASopathy (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome separation (ISO)

mRNA splicing, via spliceosome (ISO)

negative regulation of centrosome duplication (ISO)

regulation of protein catabolic process (ISO)

Cellular Component

centrosome (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CENATAC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,371,873 - 110,386,921 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	15,647,483 - 15,662,234 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CENATAC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	118,998,138 - 119,015,793 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	118,998,138 - 119,015,793 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	118,868,848 - 118,886,503 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,374,062 - 118,391,665 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	116,026,304 - 116,043,591 (+)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,808,558 - 114,826,114 (+)	NCBI		HuRef
CHM1_1	11	118,755,129 - 118,772,738 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	119,018,492 - 119,036,154 (+)	NCBI		T2T-CHM13v2.0

Cenatac
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,321,456 - 44,329,390 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	44,321,456 - 44,329,866 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	44,410,159 - 44,418,084 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,410,159 - 44,418,569 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,218,246 - 44,226,090 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	44,161,155 - 44,168,998 (-)	NCBI		MGSCv36	mm8
Celera	9	41,657,767 - 41,665,632 (-)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Cenatac
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,632,777 - 53,639,661 (-)	NCBI		GRCr8
mRatBN7.2	8	44,735,968 - 44,742,859 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	44,735,972 - 44,742,837 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,232,173 - 50,239,025 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,510,890 - 48,517,743 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,380,903 - 46,387,785 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,729,695 - 48,736,574 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,729,835 - 48,736,506 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,348,666 - 47,355,554 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,376,648 - 47,383,464 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	44,322,086 - 44,328,965 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Cenatac
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	20,113,375 - 20,126,656 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	20,113,844 - 20,126,783 (+)	NCBI	ChiLan1.0	ChiLan1.0

CENATAC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	119,702,952 - 119,720,507 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	120,806,781 - 120,824,269 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	113,836,400 - 113,853,928 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	117,766,527 - 117,784,132 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,766,526 - 117,784,125 (+)	Ensembl	panpan1.1		panPan2

CENATAC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	14,836,293 - 14,843,731 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	14,836,291 - 14,843,875 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	14,889,198 - 14,896,665 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	14,779,553 - 14,786,992 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	14,779,561 - 14,786,965 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	14,917,797 - 14,925,274 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	14,821,548 - 14,828,993 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	14,861,939 - 14,869,375 (-)	NCBI		UU_Cfam_GSD_1.0

Cenatac
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	101,043,830 - 101,053,420 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	3,965,256 - 3,974,739 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	3,965,259 - 3,974,736 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CENATAC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,230,395 - 46,239,433 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,230,365 - 46,239,433 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,265,446 - 51,274,522 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cenatac
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	14,394,981 - 14,407,122 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	14,395,330 - 14,407,122 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008021130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008021131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008021130 ⟹ XP_008019321

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	110,371,873 - 110,386,873 (+)	NCBI
Vero_WHO_p1.0	NW_023666043	15,647,488 - 15,662,234 (-)	NCBI

Sequence:

show sequence

CGCTGGGTTAGCCCCGCCCCGAAGGGTCAGAGGTCAGGGGTCAGGAGCCGCCGGATGGCGTAGG
ATCAGCTGCTGGTGGTGGTGATACCGGGTCCCCCGCCTATGGCGCCGGCGCAGCGCTGCCCTCT
GTGCCGCCAGACCTTCTTCTGTGGTCGCGGGCACGTCTACAGCCGCAAGCACCAGCGGCAGCTG
AAGGAGGCTTTGGAGAGGCTCCTGCCCCAGGTGGAGGCGGCCCGCAAGGCCATCCGCGCCGCTC
AGGTGGAGCGCTACGTGCCGGAACACGAGCGATGCTGCTGGTGCCTGTGCTGCGGCTGTGAGGT
GCGGGAACACCTGAGCCATGGAAACCTGACGGTGCTGTATGGGGGGCTGCTGGAGCATCTGGCC
AGCCCTGAGCACAAGAAAGCAACCAACAAATTCTGGTGGGAGAACAAAGCTGAGGTCCAAATGA
AAGAGAAGTTTCTGGTCACTCCCCAGGATTATGTACGATTCAAGAAATCCATGGTGAAAGGTTT
GGATTCCTACGAAGAAAAGGAGGATGAGGTGATCAAGGAGATGGCAGCTCAGATCCGCGAGGTG
GAGCAGAGCCGGCAGGAGGTGGTTCGGTCTGTCTTAGAGCCTCAGGCAGTGCCAGACCCAGAAG
AGGGCTCTTCAGCACCTAGAAGCTGGAAAGGGATGAACAGCCAAGTAGCTTCCAGCTCACAGCA
GCCCTCAAACTTGGACCTGCCACCAGCTCCAGAGCTTGACTGGATGGAGATAGGACCATCTCTG
ACATTCATTGGCCATCAGGATATACCAGGAGTTGGTAACATCCACTCAGGTGCCACACCTCCCT
GGATGATCCAAGAGGAATACATCGGTGGGAACCAAGAAATAGGACCATCCTATGAAGAATTTCT
TAAAGAAAAGGAAAAACAGAAGTTGAAAAAACTCCCCCCAGACCGAGTTGGGGCCAACTTTGAT
CACAGCTCCAGGACCAGTGCAGGCTGGCTGCCCTCTTTTGGCCGCGTCTGGAATAATGGACGAC
GCTGGCAGTCCAGGTATGTGTTCAGTGCCAGGTCTCCAACCTACCCATCCAACCTCCTTTTTGG
AGATATCACCCTTCATCCTGTTAACCCTTTATTTCCTTTCAGACATCAATTCAAAACTGAAGCT
GCAGCAATGAAGAAGCAGTCACATACAGAAAAAAGCTAATCATGCCTTACCAACTACCATGAGG
CTAAAAGCAAAGTCAACAAACCCCTACTTTCCACCGAATTCTTTATCATTGTCTTTCTTAGGAA
ACAGACATACTCATTCATTTGATTTAATAAAGTTTTATTTTTCCAAATGTA

hide sequence

RefSeq Acc Id:

XM_008021131 ⟹ XP_008019322

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	110,371,875 - 110,386,921 (+)	NCBI
Vero_WHO_p1.0	NW_023666043	15,647,483 - 15,662,232 (-)	NCBI

Sequence:

show sequence

CTGGGTTAGCCCCGCCCCGAAGGGTCAGAGGTCAGGGGTCAGGAGCCGCCGGATGGCGTAGGAT
CAGCTGCTGGTGGTGGTGATACCGGGTCCCCCGCCTATGGCGCCGGCGCAGCGCTGCCCTCTGT
GCCGCCAGACCTTCTTCTGTGGTCGCGGGCACGTCTACAGCCGCAAGCACCAGCGGCAGCTGAA
GGAGGCTTTGGAGAGGCTCCTGCCCCAGGTGGAGGCGGCCCGCAAGGCCATCCGCGCCGCTCAG
GTGGAGCGCTACGTGCCGGAACACGAGCGATGCTGCTGGTGCCTGTGCTGCGGCTGTGAGGTGC
GGGAACACCTGAGCCATGGAAACCTGACGGTGCTGTATGGGGGGCTGCTGGAGCATCTGGCCAG
CCCTGAGCACAAGAAAGCAACCAACAAATTCTGGTGGGAGAACAAAGCTGAGGTCCAAATGAAA
GAGAAGTTTCTGGTCACTCCCCAGGATTATGTACGATTCAAGAAATCCATGGTGAAAGGTTTGG
ATTCCTACGAAGAAAAGGAGGATGAGGTGATCAAGGAGATGGCAGCTCAGATCCGCGAGGTGGA
GCAGAGCCGGCAGGAGGTGGTTCGGTCTGTCTTAGAGCCTCAGGCAGTGCCAGACCCAGAAGAG
GGCTCTTCAGCACCTAGAAGCTGGAAAGGGATGAACAGCCAAGTAGCTTCCAGCTCACAGCAGC
CCTCAAACTTGGACCTGCCACCAGCTCCAGAGCTTGACTGGATGGAGATAGGACCATCTCTGAC
ATTCATTGGCCATCAGGATATACCAGGAGTTGGTAACATCCACTCAGGTGCCACACCTCCCTGG
ATGATCCAAGAGGAATACATCGGTGGGAACCAAGAAATAGGACCATCCTATGAAGAATTTCTTA
AAGAAAAGGAAAAACAGAAGTTGAAAAAACTCCCCCCAGACCGAGTTGGGGCCAACTTTGATCA
CAGCTCCAGGACCAGTGCAGGCTGGCTGCCCTCTTTTGGCCGCGTCTGGAATAATGGACGACGC
TGGCAGTCCAGACATCAATTCAAAACTGAAGCTGCAGCAATGAAGAAGCAGTCACATACAGAAA
AAAGCTAATCATGCCTTACCAACTACCATGAGGCTAAAAGCAAAGTCAACAAACCCCTACTTTC
CACCGAATTCTTTATCATTGTCTTTCTTAGGAAACAGACATACTCATTCATTTGATTTAATAAA
GTTTTATTTTTCCAAATGTACAGTTGGTTAGACCTGTAAAAAAAAATTAAAAGAATCAGAACCA
TAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008019321	(Get FASTA)	NCBI Sequence Viewer
	XP_008019322	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_008019321 ⟸ XM_008021130
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_008019322 ⟸ XM_008021131
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	CCDC84	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-06-26	CENATAC	centrosomal AT-AC splicing factor	CCDC84	coiled-coil domain containing 84	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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