S100G (S100 calcium binding protein G) - Rat Genome Database

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Gene: S100G (S100 calcium binding protein G) Chlorocebus sabaeus
Analyze
Symbol: S100G
Name: S100 calcium binding protein G
RGD ID: 18363101
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); metal ion binding (inferred); INVOLVED IN response to organic cyclic compound (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); gestational diabetes (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein S100-G
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,082,230 - 15,087,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX15,083,524 - 15,087,004 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605616,933,822 - 16,937,577 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,082,230 - 15,087,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX15,083,524 - 15,087,004 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605616,933,822 - 16,937,577 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,650,158 - 16,654,670 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,650,158 - 16,654,670 (+)EnsemblGRCh38hg38GRCh38
GRCh37X16,668,281 - 16,672,793 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,578,202 - 16,582,712 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X16,427,937 - 16,432,448NCBI
CeleraX20,786,679 - 20,791,190 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX14,422,857 - 14,427,585 (+)NCBIHuRef
CHM1_1X16,698,663 - 16,703,172 (+)NCBICHM1_1
T2T-CHM13v2.0X16,232,624 - 16,237,136 (+)NCBIT2T-CHM13v2.0
S100g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,744,988 - 161,747,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,744,988 - 161,747,595 (-)EnsemblGRCm39 Ensembl
GRCm38X162,961,992 - 162,964,599 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,961,992 - 162,964,599 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X159,399,924 - 159,402,531 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X158,306,097 - 158,308,704 (-)NCBIMGSCv36mm8
CeleraX146,186,381 - 146,188,986 (-)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX75.15NCBI
S100g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X35,337,636 - 35,340,205 (+)NCBIGRCr8
mRatBN7.2X31,705,853 - 31,708,422 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX31,705,866 - 31,708,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX32,740,258 - 32,742,781 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X36,175,676 - 36,178,203 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X32,364,662 - 32,367,187 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X33,442,820 - 33,445,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,443,186 - 33,445,709 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X33,790,619 - 33,793,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X52,446,817 - 52,449,342 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X52,500,285 - 52,502,811 (+)NCBI
CeleraX32,019,786 - 32,022,301 (+)NCBICelera
Cytogenetic MapXq14NCBI
S100g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555191,622,522 - 1,625,164 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555191,623,695 - 1,625,164 (-)NCBIChiLan1.0ChiLan1.0
S100G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X18,447,395 - 18,451,064 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X18,449,593 - 18,454,419 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X9,272,311 - 9,276,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X16,642,211 - 16,645,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX16,642,211 - 16,645,760 (+)Ensemblpanpan1.1panPan2
S100G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X12,808,234 - 12,813,696 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX12,808,718 - 12,812,972 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX12,659,893 - 12,664,199 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X12,771,897 - 12,776,208 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX12,771,404 - 12,776,325 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X12,839,790 - 12,844,092 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X12,826,177 - 12,830,481 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X12,853,701 - 12,858,003 (+)NCBIUU_Cfam_GSD_1.0
S100g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X5,930,101 - 5,934,996 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364705,930,140 - 5,935,000 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364705,931,158 - 5,934,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX13,107,402 - 13,114,213 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X13,107,611 - 13,114,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X14,053,102 - 14,059,701 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXpNCBI
S100g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248291,402,443 - 1,403,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248291,402,296 - 1,403,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 1 14 20
Below cutoff 17 4 16

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012918   ⟹   ENSCSAP00000010929
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX15,083,524 - 15,087,004 (+)Ensembl
RefSeq Acc Id: XM_007991128   ⟹   XP_007989319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X15,083,251 - 15,087,327 (+)NCBI
Vero_WHO_p1.0NW_02366605616,933,822 - 16,937,577 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007989319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010929
  ENSCSAP00000010929.1
Reference Protein Sequences
RefSeq Acc Id: XP_007989319   ⟸   XM_007991128
- UniProtKB: A0A0D9RQP0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010929   ⟸   ENSCSAT00000012918


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014818 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012918.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report csab:103231653 UniProtKB/TrEMBL
NCBI Gene S100G ENTREZGENE
PANTHER PTHR11639:SF73 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0D9RQP0 ENTREZGENE, UniProtKB/TrEMBL