LOC103240946 (olfactory receptor 10A6) - Rat Genome Database

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Gene: LOC103240946 (olfactory receptor 10A6) Chlorocebus sabaeus
Analyze
Symbol: LOC103240946 (Ensembl: OR10A6)
Name: olfactory receptor 10A6 (Ensembl:olfactory receptor family 10 subfamily A member 6 (gene/pseudogene))
RGD ID: 18356160
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,890,130 - 56,893,478 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,891,311 - 56,892,255 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038154,620,874 - 154,621,824 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC103240946
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,890,130 - 56,893,478 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,891,311 - 56,892,255 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038154,620,874 - 154,621,824 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OR10A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38117,924,592 - 7,931,268 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl117,924,592 - 7,931,268 (-)EnsemblGRCh38hg38GRCh38
GRCh37117,946,139 - 7,952,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,905,841 - 7,906,785 (-)NCBINCBI36Build 36hg18NCBI36
Build 34117,905,840 - 7,906,785NCBI
Celera118,064,777 - 8,065,721 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef117,615,953 - 7,616,897 (-)NCBIHuRef
CHM1_1117,948,238 - 7,949,182 (-)NCBICHM1_1
T2T-CHM13v2.0118,003,727 - 8,010,438 (-)NCBIT2T-CHM13v2.0
Or10a3m
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397108,312,562 - 108,313,542 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7108,312,527 - 108,313,582 (+)EnsemblGRCm39 Ensembl
GRCm387108,713,355 - 108,714,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7108,713,320 - 108,714,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv377115,856,869 - 115,857,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367108,504,532 - 108,505,512 (+)NCBIMGSCv36mm8
Celera7108,689,689 - 108,690,669 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
Or10a48
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,228,688 - 172,229,623 (-)NCBIGRCr8
mRatBN7.21162,793,841 - 162,794,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,793,610 - 162,797,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,121,781 - 171,122,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,307,802 - 178,308,737 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01170,986,699 - 170,987,634 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01173,392,455 - 173,393,390 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,392,455 - 173,393,390 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01180,378,259 - 180,379,194 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,548,296 - 166,549,231 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,658,958 - 166,659,894 (+)NCBI
Celera1160,700,521 - 160,701,456 (-)NCBICelera
Cytogenetic Map1q33NCBI
OR10A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12131,460,828 - 31,468,750 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2131,460,892 - 31,461,833 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,030,429 - 31,038,351 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,325,141 - 32,333,063 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12131,595,149 - 31,603,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02131,761,173 - 31,769,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,054,988 - 32,062,956 (-)NCBIUU_Cfam_GSD_1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 11
Below cutoff 1 6 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019420   ⟹   ENSCSAP00000018839
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl156,891,311 - 56,892,255 (+)Ensembl
RefSeq Acc Id: XM_037997639   ⟹   XP_037853567
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038154,620,874 - 154,621,824 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037853567 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018839.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000018839   ⟸   ENSCSAT00000019420
RefSeq Acc Id: XP_037853567   ⟸   XM_037997639
- UniProtKB: A0A0D9SDA0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019330 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019420.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC103240946 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 10A6 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SDA0 ENTREZGENE, UniProtKB/TrEMBL