ANTXR1 (ANTXR cell adhesion molecule 1) - Rat Genome Database

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Gene: ANTXR1 (ANTXR cell adhesion molecule 1) Chlorocebus sabaeus
Analyze
Symbol: ANTXR1
Name: ANTXR cell adhesion molecule 1
RGD ID: 18355693
Description: ENCODES a protein that exhibits actin filament binding (ortholog); collagen binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); blood vessel development (ortholog); negative regulation of extracellular matrix assembly (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); breast cancer (ortholog); colorectal cancer (ortholog); FOUND IN external side of plasma membrane (ortholog); filopodium membrane (ortholog); lamellipodium membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: anthrax toxin receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,849,911 - 38,116,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1437,877,436 - 38,115,938 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,876,615 - 74,142,611 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ANTXR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,849,911 - 38,116,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1437,877,436 - 38,115,938 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,876,615 - 74,142,611 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ANTXR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38269,013,144 - 69,249,327 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl269,013,176 - 69,249,327 (+)EnsemblGRCh38hg38GRCh38
GRCh37269,240,276 - 69,476,459 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,093,993 - 69,329,806 (+)NCBINCBI36Build 36hg18NCBI36
Celera269,091,094 - 69,326,525 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef268,976,485 - 69,212,089 (+)NCBIHuRef
CHM1_1269,169,599 - 69,405,781 (+)NCBICHM1_1
T2T-CHM13v2.0269,025,553 - 69,261,692 (+)NCBIT2T-CHM13v2.0
Antxr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,110,835 - 87,312,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,110,835 - 87,312,803 (-)EnsemblGRCm39 Ensembl
GRCm38687,133,853 - 87,335,809 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,133,853 - 87,335,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,083,847 - 87,285,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,099,487 - 87,301,349 (-)NCBIMGSCv36mm8
Celera689,073,161 - 89,274,792 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.94NCBI
Antxr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,148,102 - 121,335,549 (-)NCBIGRCr8
mRatBN7.24119,590,770 - 119,778,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,590,771 - 119,778,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,063,963 - 125,249,842 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,838,704 - 121,024,595 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,462,951 - 119,648,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,946,267 - 119,131,202 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,946,268 - 119,131,202 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,514,051 - 183,699,805 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,297,955 - 121,483,876 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,543,680 - 121,728,345 (-)NCBI
Celera4108,561,084 - 108,748,509 (-)NCBICelera
Cytogenetic Map4q34NCBI
Antxr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,824,435 - 16,033,946 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542415,820,734 - 16,034,278 (-)NCBIChiLan1.0ChiLan1.0
ANTXR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21257,166,003 - 57,402,577 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A57,169,950 - 57,406,444 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A69,054,253 - 69,290,554 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A70,176,051 - 70,412,454 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A70,175,982 - 70,412,454 (+)Ensemblpanpan1.1panPan2
ANTXR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,829,573 - 68,021,368 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,829,225 - 68,019,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,715,413 - 67,912,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,847,827 - 69,045,692 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,847,772 - 69,045,589 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11068,529,210 - 68,726,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,830,407 - 69,027,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01069,125,652 - 69,323,525 (+)NCBIUU_Cfam_GSD_1.0
Antxr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629215,054,414 - 15,282,299 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649113,288,717 - 13,516,984 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649113,288,986 - 13,516,878 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANTXR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl373,157,747 - 73,398,379 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1373,157,744 - 73,398,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2376,588,817 - 76,839,587 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Antxr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247624,128,127 - 4,377,278 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247624,051,479 - 4,377,237 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 44
Low 12 16
Below cutoff 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000013063   ⟹   ENSCSAP00000011074
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1437,877,436 - 38,115,938 (-)Ensembl
RefSeq Acc Id: XM_007970382   ⟹   XP_007968573
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11437,877,488 - 38,116,043 (-)NCBI
Vero_WHO_p1.0NW_02366604573,876,618 - 74,115,069 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007970383   ⟹   XP_007968574
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11437,849,911 - 38,116,058 (-)NCBI
Vero_WHO_p1.0NW_02366604573,876,615 - 74,142,611 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007970384   ⟹   XP_007968575
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11437,921,331 - 38,116,045 (-)NCBI
Vero_WHO_p1.0NW_02366604573,876,620 - 74,060,193 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007968573 (Get FASTA)   NCBI Sequence Viewer  
  XP_007968574 (Get FASTA)   NCBI Sequence Viewer  
  XP_007968575 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011074.1
Reference Protein Sequences
RefSeq Acc Id: XP_007968574   ⟸   XM_007970383
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RR35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007968573   ⟸   XM_007970382
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RR35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007968575   ⟸   XM_007970384
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR35 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011074   ⟸   ENSCSAT00000013063


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014972 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013063.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro Anthrax_toxin_rcpt_C UniProtKB/TrEMBL
  Anthrax_toxin_rcpt_extracel UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103220113 UniProtKB/TrEMBL
NCBI Gene ANTXR1 ENTREZGENE
PANTHER ANTHRAX TOXIN RECEPTOR UniProtKB/TrEMBL
  PTHR16059:SF11 UniProtKB/TrEMBL
Pfam Ant_C UniProtKB/TrEMBL
  Anth_Ig UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A0D9RR35 ENTREZGENE, UniProtKB/TrEMBL