SEMA4A (semaphorin 4A) - Rat Genome Database

Name: SEMA4A
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SEMA4A (semaphorin 4A) Chlorocebus sabaeus

Analyze

Symbol:

SEMA4A

Name:

semaphorin 4A

RGD ID:

18345067

Description:

ENCODES a protein that exhibits chemorepellent activity (inferred); semaphorin receptor binding (inferred); INVOLVED IN axon guidance (inferred); axonogenesis (inferred); cell differentiation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Colonic Polyps (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

semaphorin-4A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	7,684,107 - 7,716,866 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	7,683,994 - 7,708,741 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,011,434 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Colonic Polyps (ISO)

colorectal cancer (ISO)

cone-rod dystrophy (ISO)

cone-rod dystrophy 10 (ISO)

fundus dystrophy (ISO)

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 35 (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Sveinsson chorioretinal atrophy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA)

axonogenesis (IEA)

cell differentiation (IEA)

negative chemotaxis (IEA)

negative regulation of angiogenesis (IEA)

negative regulation of axon extension involved in axon guidance (IEA)

nervous system development (IEA)

neural crest cell migration (IEA)

positive regulation of cell migration (IEA)

positive regulation of excitatory synapse assembly (IEA)

positive regulation of inhibitory synapse assembly (IEA)

regulation of cell shape (IEA)

regulation of endothelial cell migration (IEA)

semaphorin-plexin signaling pathway (IEA)

T cell differentiation involved in immune response (IEA)

T-helper 1 cell differentiation (IEA)

Cellular Component

membrane (IEA)

Molecular Function

chemorepellent activity (IEA)

protein binding (ISO)

semaphorin receptor binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SEMA4A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	7,684,107 - 7,716,866 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	7,683,994 - 7,708,741 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,011,434 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SEMA4A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	156,147,373 - 156,177,744 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	156,147,366 - 156,177,752 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	156,119,735 - 156,147,535 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	154,390,012 - 154,414,159 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	152,936,460 - 152,960,607	NCBI
Celera	1	129,192,724 - 129,220,533 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI
HuRef	1	127,481,928 - 127,509,284 (+)	NCBI		HuRef
CHM1_1	1	157,515,841 - 157,543,516 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	155,285,786 - 155,316,193 (+)	NCBI		T2T-CHM13v2.0

Sema4a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	88,343,266 - 88,368,500 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	88,343,266 - 88,368,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	88,435,959 - 88,461,182 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	88,435,959 - 88,461,182 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	88,239,884 - 88,265,104 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	88,521,886 - 88,541,606 (-)	NCBI		MGSCv36	mm8
Celera	3	88,475,600 - 88,501,116 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.83	NCBI

Sema4a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	176,194,248 - 176,215,752 (-)	NCBI		GRCr8
mRatBN7.2	2	173,896,432 - 173,917,903 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	173,896,439 - 173,914,442 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	181,040,481 - 181,058,509 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	179,062,844 - 179,080,872 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	173,663,030 - 173,681,029 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	187,799,568 - 187,823,014 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	187,799,568 - 187,822,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	207,201,920 - 207,225,358 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,552,405 - 180,570,359 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	180,502,513 - 180,520,465 (-)	NCBI
Celera	2	167,841,037 - 167,859,037 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Sema4a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	2,316,390 - 2,342,233 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	2,316,402 - 2,341,873 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEMA4A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	93,668,571 - 93,698,992 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	93,400,554 - 93,430,965 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	131,489,446 - 131,519,864 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	135,321,147 - 135,350,724 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	135,321,288 - 135,350,724 (+)	Ensembl	panpan1.1		panPan2

SEMA4A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	41,670,814 - 41,695,349 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	41,672,120 - 41,692,460 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	41,160,653 - 41,184,935 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	41,537,442 - 41,561,790 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	41,537,570 - 41,558,851 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	41,318,592 - 41,342,849 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	41,371,735 - 41,396,228 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	41,656,115 - 41,680,364 (-)	NCBI		UU_Cfam_GSD_1.0

Sema4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	26,373,899 - 26,400,801 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	5,406,194 - 5,431,185 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	5,404,380 - 5,431,183 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEMA4A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	93,865,057 - 93,886,371 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	93,865,054 - 93,892,995 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	102,607,463 - 102,628,790 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Sema4a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	1,470,525 - 1,495,369 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	1,470,666 - 1,493,634 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium		11	8
Low	36	9	52
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007976744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007976745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007976746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007976747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007976748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037997778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037997779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037997780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000000120 ⟹ ENSCSAP00000015932

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	7,683,994 - 7,708,741 (-)	Ensembl

RefSeq Acc Id:

XM_007976745 ⟹ XP_007974936

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	7,684,107 - 7,716,047 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,010,556 (-)	NCBI

Sequence:

show sequence

GAGCCCAAGGGGAACAGGGGGCAGGATCTGAGGAGGTGGAGTCAGAAGCTGGGTGGCCAGCATG
GGGGTCTCATGGGATGAGGGAAAAGTGAGGCAGAGGACCCTGGGGTCTTCCAAGGGAGTAGGGA
AGGTGTCAGGTGGTCCCCGCTCTGGCTCTCCTGCCCCTGCCAAGTCCAGTCCTCTCCCCACCAC
CTACTTTCCTCTACATTCACCCCCTTAAGCTGCCCCTGGCTAATTCTCCTTGGTCCCTTTAAGA
GCTGCCTGGGAACTGGGGCACTGGAGGGGGCTGGAAGGGCCCCCACCCCCTCCCTGCCATGCCT
GGCCCTGCTCCACCCCCTGTCCGGTGCAGACTCTGCTGGAAGTCTTGGACGCCTGGGTTAGGGT
CTCCTCTTCTGGGCTGGGGAGCTCCCTGGTGACAGTCTGTGGCTGAGCATGGCCCTCCCAGCCC
TGGGCCTGGACCCCTGGAGCCTCCTGGGCCTTTTCCTCTTCCAACTGCTCCAGCTGCTGCTGCC
GACGACGACCGCGGGGGGAGGCGGGCAGGGGCCCATGCCCAGGGTCAGATACTATGCAGGGGAT
GAACGTAGGGCACTCAGCTTCTTCCACCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCCTGA
GTGGTAATGGAAATACTCTCTATGTGGGGGCTCGAGAAGCCATCCTGGCCTTGGATATCCAGGA
TCCAGGGGTCCCCAGGCTAAAGAACATGATACGGTGGCCAGCCAGTGACAGAAAAAAGAGTGAA
TGTGCCTTTAAGAAGAAGAGCAATGAGACACAATGTTTCAACTTCATCCGTGTCCTGGTTTCTT
ACAACGTCACCCATCTCTACACCTGCGGCACCTTCGCCTTCAGCCCTGCTTGTACCTTCATTGA
ACTTCAAGACTCATACCTGTTGCCCATCTTGGAGGACAAGGTCATGGAGGGAAAAGGCCAAAGC
CCCTTTGACCCCGCTCACAAGCATACGGCTGTCTTGGTGGATGGGATGCTCTATTCTGGTACCA
TGAACAACTTCCTGGGCAGTGAGCCCATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAA
GACCGACAACTTCCTCCGCTGGCTGCATCCGGACGCCTCCTTCGTGGCAGCCATCCCTTCGACC
CAGGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAGAGGCTCCACA
CATCCCGGGTGGCTCGAGTCTGCAAGAATGACGTGGGCGGCGAAAAACTGCTGCAGAGGAAGTG
GACCACCTTCCTGAAGGCCCAGTTGCTCTGCACCAAGCCGGGGCAGCTGCCCTTCAACGTCATC
CGCCACGCGGTTCTGCTGCCCGCCGATTCTCCCACAGCTCCCCATATCTACGCAGTCTTCACCT
CCCAGTGGCAGATTGGCGGGACCAGGAGCTCTGCGGTTTGTGCCTTCTCTCTCTTGGACATTGA
ACGCGTCTTTAAGGGGAAATACAAAGAGTTGAACAAAGAAACTTCACGCTGGACTACTTATAGG
GGCCCTGAGACCAACCCCCGGCCGGGCAGTTGTTCAGTGGGCCCCTCCTCTGATAAGGCCTTGA
CCTTCATGAAGGACCATTTCCTGATGGATGAGCAGGTGGTGGGGACGCCCCTGCTGGTGAAATC
TGGTGTGGAGTATACACGGCTTGCAGTGGAGACAGCCCAGGGCCTTGATGGGCGCAGCCATCTT
GTCATGTACCTGGGAACCACCACAGGGTCGCTCCACAAGGCTGTGGTGAGTGGGGACAGCGGTG
CTCATCTGGTGGAAGAGATTCAGCTGTTCCCGGACCCCGAACCTGTTCGTAACCTGCAGCTGGC
CCCCACCCAGGGTGCAGTGTTTGTAGGCTTCTCAGGAGGTGTCTGGAGGGTGCCCCGAGCCAAC
TGTAGCGTCTATGAGAGCTGTGTGGACTGTGTCCTTGCCCGGGATCCCCACTGTGCCTGGGACC
CTGAGTCCCGAACCTGTTGCTTCCTGTCTGCCCCCACCCTGAACTCCTGGAAGCAGGACATGGA
GCGGGGGAACCCAGAGTGGGCATGTGCCAGTGGCCCCATGAGCAGGAGCCTTCGGCCTCAGAGC
CGCCCGCAAATCATTAAAGAAGTTCTGGCTGTCCCCAACTCCTTCCTGGAGCTCCCGTGCCCCC
ACCTGTCAGCGTTGGCCTCTTACTACTGGAGTCATGGCCCAGCAGCAGTCCCAGAAGCCTCTTC
CACTGTCTACAATGGCTCCCTCTTGCTGATAGTGCAGGATGGAGTTGGAGGTCTCTACCAGTGC
TGGGCAACTGAGAATGGCTTTTCATACCCTGTGGTCTCCTACTGGGTGGACAGCCAGGACCAGC
CCCTGGCCCTGGATCCTGAACTGGCAGGCATCCCCCGGGAGCACGTGGAGGTCCCGTTGACCAG
GGTCAGTGGTGGGACCGCCCTGGCTGCCCAGCGGTCCTACTGGCCCCACTTTGTCACTGTCACT
GTCCTCCTCGCCTTAGTGCTTTCAGGAGCCCTCATCATCCTCCTGGCCTCCCCACTGGGAGCAC
TCCGGGCTCGGGGCAAGGTTCAGGGCTGCGAGACCCTGCCCCCTGGGGAGAAGGCCCCATTGAG
CAGAGAGCAACACCTCCAGTCCCCCAAGGAATGCAGGACCTCTGCCAGCGATGTGGACGCTGAC
AACTGCCTAGGCACTGAGGTGGCTTAAACTCTAGGCACAGGCTGGGGCTGCAGGGCAGGCACCT
GGCCATGCTGGCTGGGTGGCCCCAGCACAGCCTTGACTAGGATGAGAGCAGCACAAAAGACCAC
CTTTCTCCCCTGAGAGGAGCTTCTGCTACTCTGCATCACCGATGGCACTCAGCAGGGTGGTGCG
AAGCAGTCTGCCTCCCCTATGGGACTCCCTTCTACCAAGCACACGAGCTCTCTAACAGGGTGGG
GGCTACCCCCGGACCTGCTCCTGCGCTGATATTGAAGAACCTGGAGAGGATCCTTCAGTTCTGG
CCATTCCAGGGACCCTCCAGAAACACAGTGTTCCAAGAGACCCTAAAAAACCTGCCTGTCCCAG
GACACTATGGTAATGAACACCAAACATCTAAACAACCATATGCTAACATGCCAGTCGTGGAAAC
TCCACTCTGAAGTTGCCACTTTGAACACCAACACTCCCCTCTCCCAGGGTTGTGCAGGGATCTG
CTCCCTCCTGCTTCCCTTACCAGACATGCACCACTGACTCCCAGGAAGTCTTTCCTGAAGTCTG
ACCACCTTCCTTCTTGCTTCAGTTGGGGCAGACTGTGATCCCTTCTGCCCTGGGAGAATGGTAG
GGGTAATCTGAGCCTTGTTCACTCCTTTACCCTAGCTGACCCCTTGACCTCTCCCCTTCCCTTT
TCTTTTGTTTTGGGATTCAGAAAACTGCTTGTCAGAGACTGTTTATTTTTTATTAAAAAGACAA
AGCTTATGTATGA

hide sequence

RefSeq Acc Id:

XM_007976746 ⟹ XP_007974937

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	7,684,107 - 7,713,133 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,008,613 (-)	NCBI

Sequence:

show sequence

TGCGGTCGCCATGGTGACTGAGGACCAGTGAGGCGGGATGGGGTTGAGGATGGGGGTGGGGGTG
TGGCAGGGGCTGAGGCACTGGGAGACCGGAAAGCCTGGCATTCCAGAGGGAGGGAAACGCAGCA
GCATCCCCAAGCTCCAGAGCTCCCTGGTGACAGTCTGTGGCTGAGCATGGCCCTCCCAGCCCTG
GGCCTGGACCCCTGGAGCCTCCTGGGCCTTTTCCTCTTCCAACTGCTCCAGCTGCTGCTGCCGA
CGACGACCGCGGGGGGAGGCGGGCAGGGGCCCATGCCCAGGGTCAGATACTATGCAGGGGATGA
ACGTAGGGCACTCAGCTTCTTCCACCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCCTGAGT
GGTAATGGAAATACTCTCTATGTGGGGGCTCGAGAAGCCATCCTGGCCTTGGATATCCAGGATC
CAGGGGTCCCCAGGCTAAAGAACATGATACGGTGGCCAGCCAGTGACAGAAAAAAGAGTGAATG
TGCCTTTAAGAAGAAGAGCAATGAGACACAATGTTTCAACTTCATCCGTGTCCTGGTTTCTTAC
AACGTCACCCATCTCTACACCTGCGGCACCTTCGCCTTCAGCCCTGCTTGTACCTTCATTGAAC
TTCAAGACTCATACCTGTTGCCCATCTTGGAGGACAAGGTCATGGAGGGAAAAGGCCAAAGCCC
CTTTGACCCCGCTCACAAGCATACGGCTGTCTTGGTGGATGGGATGCTCTATTCTGGTACCATG
AACAACTTCCTGGGCAGTGAGCCCATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAAGA
CCGACAACTTCCTCCGCTGGCTGCATCCGGACGCCTCCTTCGTGGCAGCCATCCCTTCGACCCA
GGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAGAGGCTCCACACA
TCCCGGGTGGCTCGAGTCTGCAAGAATGACGTGGGCGGCGAAAAACTGCTGCAGAGGAAGTGGA
CCACCTTCCTGAAGGCCCAGTTGCTCTGCACCAAGCCGGGGCAGCTGCCCTTCAACGTCATCCG
CCACGCGGTTCTGCTGCCCGCCGATTCTCCCACAGCTCCCCATATCTACGCAGTCTTCACCTCC
CAGTGGCAGATTGGCGGGACCAGGAGCTCTGCGGTTTGTGCCTTCTCTCTCTTGGACATTGAAC
GCGTCTTTAAGGGGAAATACAAAGAGTTGAACAAAGAAACTTCACGCTGGACTACTTATAGGGG
CCCTGAGACCAACCCCCGGCCGGGCAGTTGTTCAGTGGGCCCCTCCTCTGATAAGGCCTTGACC
TTCATGAAGGACCATTTCCTGATGGATGAGCAGGTGGTGGGGACGCCCCTGCTGGTGAAATCTG
GTGTGGAGTATACACGGCTTGCAGTGGAGACAGCCCAGGGCCTTGATGGGCGCAGCCATCTTGT
CATGTACCTGGGAACCACCACAGGGTCGCTCCACAAGGCTGTGGTGAGTGGGGACAGCGGTGCT
CATCTGGTGGAAGAGATTCAGCTGTTCCCGGACCCCGAACCTGTTCGTAACCTGCAGCTGGCCC
CCACCCAGGGTGCAGTGTTTGTAGGCTTCTCAGGAGGTGTCTGGAGGGTGCCCCGAGCCAACTG
TAGCGTCTATGAGAGCTGTGTGGACTGTGTCCTTGCCCGGGATCCCCACTGTGCCTGGGACCCT
GAGTCCCGAACCTGTTGCTTCCTGTCTGCCCCCACCCTGAACTCCTGGAAGCAGGACATGGAGC
GGGGGAACCCAGAGTGGGCATGTGCCAGTGGCCCCATGAGCAGGAGCCTTCGGCCTCAGAGCCG
CCCGCAAATCATTAAAGAAGTTCTGGCTGTCCCCAACTCCTTCCTGGAGCTCCCGTGCCCCCAC
CTGTCAGCGTTGGCCTCTTACTACTGGAGTCATGGCCCAGCAGCAGTCCCAGAAGCCTCTTCCA
CTGTCTACAATGGCTCCCTCTTGCTGATAGTGCAGGATGGAGTTGGAGGTCTCTACCAGTGCTG
GGCAACTGAGAATGGCTTTTCATACCCTGTGGTCTCCTACTGGGTGGACAGCCAGGACCAGCCC
CTGGCCCTGGATCCTGAACTGGCAGGCATCCCCCGGGAGCACGTGGAGGTCCCGTTGACCAGGG
TCAGTGGTGGGACCGCCCTGGCTGCCCAGCGGTCCTACTGGCCCCACTTTGTCACTGTCACTGT
CCTCCTCGCCTTAGTGCTTTCAGGAGCCCTCATCATCCTCCTGGCCTCCCCACTGGGAGCACTC
CGGGCTCGGGGCAAGGTTCAGGGCTGCGAGACCCTGCCCCCTGGGGAGAAGGCCCCATTGAGCA
GAGAGCAACACCTCCAGTCCCCCAAGGAATGCAGGACCTCTGCCAGCGATGTGGACGCTGACAA
CTGCCTAGGCACTGAGGTGGCTTAAACTCTAGGCACAGGCTGGGGCTGCAGGGCAGGCACCTGG
CCATGCTGGCTGGGTGGCCCCAGCACAGCCTTGACTAGGATGAGAGCAGCACAAAAGACCACCT
TTCTCCCCTGAGAGGAGCTTCTGCTACTCTGCATCACCGATGGCACTCAGCAGGGTGGTGCGAA
GCAGTCTGCCTCCCCTATGGGACTCCCTTCTACCAAGCACACGAGCTCTCTAACAGGGTGGGGG
CTACCCCCGGACCTGCTCCTGCGCTGATATTGAAGAACCTGGAGAGGATCCTTCAGTTCTGGCC
ATTCCAGGGACCCTCCAGAAACACAGTGTTCCAAGAGACCCTAAAAAACCTGCCTGTCCCAGGA
CACTATGGTAATGAACACCAAACATCTAAACAACCATATGCTAACATGCCAGTCGTGGAAACTC
CACTCTGAAGTTGCCACTTTGAACACCAACACTCCCCTCTCCCAGGGTTGTGCAGGGATCTGCT
CCCTCCTGCTTCCCTTACCAGACATGCACCACTGACTCCCAGGAAGTCTTTCCTGAAGTCTGAC
CACCTTCCTTCTTGCTTCAGTTGGGGCAGACTGTGATCCCTTCTGCCCTGGGAGAATGGTAGGG
GTAATCTGAGCCTTGTTCACTCCTTTACCCTAGCTGACCCCTTGACCTCTCCCCTTCCCTTTTC
TTTTGTTTTGGGATTCAGAAAACTGCTTGTCAGAGACTGTTTATTTTTTATTAAAAAGACAAAG
CTTATGTATGA

hide sequence

RefSeq Acc Id:

XM_007976747 ⟹ XP_007974938

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	7,684,107 - 7,716,866 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,011,434 (-)	NCBI

Sequence:

show sequence

TGAGACCCAGTGAGAGACGGTTTACCCCAAGTCACCCAAGACTCCAGATTCTTAGAAAATACCG
TGGCAACTCAGAATACTGTGGGAGGACCAGGGGGGCTTTGCAGAGAAAAGGGTTGTTTTGGCAT
GAAAGAACAAGAAGAGTTTCATCAAGTGGAAATGAGAACTACTATCCAGGAAGAGTACATCTTC
CAGGTGGGAGATAAGAGCTCCCTGGTGACAGTCTGTGGCTGAGCATGGCCCTCCCAGCCCTGGG
CCTGGACCCCTGGAGCCTCCTGGGCCTTTTCCTCTTCCAACTGCTCCAGCTGCTGCTGCCGACG
ACGACCGCGGGGGGAGGCGGGCAGGGGCCCATGCCCAGGGTCAGATACTATGCAGGGGATGAAC
GTAGGGCACTCAGCTTCTTCCACCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCCTGAGTGG
TAATGGAAATACTCTCTATGTGGGGGCTCGAGAAGCCATCCTGGCCTTGGATATCCAGGATCCA
GGGGTCCCCAGGCTAAAGAACATGATACGGTGGCCAGCCAGTGACAGAAAAAAGAGTGAATGTG
CCTTTAAGAAGAAGAGCAATGAGACACAATGTTTCAACTTCATCCGTGTCCTGGTTTCTTACAA
CGTCACCCATCTCTACACCTGCGGCACCTTCGCCTTCAGCCCTGCTTGTACCTTCATTGAACTT
CAAGACTCATACCTGTTGCCCATCTTGGAGGACAAGGTCATGGAGGGAAAAGGCCAAAGCCCCT
TTGACCCCGCTCACAAGCATACGGCTGTCTTGGTGGATGGGATGCTCTATTCTGGTACCATGAA
CAACTTCCTGGGCAGTGAGCCCATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAAGACC
GACAACTTCCTCCGCTGGCTGCATCCGGACGCCTCCTTCGTGGCAGCCATCCCTTCGACCCAGG
TCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAGAGGCTCCACACATC
CCGGGTGGCTCGAGTCTGCAAGAATGACGTGGGCGGCGAAAAACTGCTGCAGAGGAAGTGGACC
ACCTTCCTGAAGGCCCAGTTGCTCTGCACCAAGCCGGGGCAGCTGCCCTTCAACGTCATCCGCC
ACGCGGTTCTGCTGCCCGCCGATTCTCCCACAGCTCCCCATATCTACGCAGTCTTCACCTCCCA
GTGGCAGATTGGCGGGACCAGGAGCTCTGCGGTTTGTGCCTTCTCTCTCTTGGACATTGAACGC
GTCTTTAAGGGGAAATACAAAGAGTTGAACAAAGAAACTTCACGCTGGACTACTTATAGGGGCC
CTGAGACCAACCCCCGGCCGGGCAGTTGTTCAGTGGGCCCCTCCTCTGATAAGGCCTTGACCTT
CATGAAGGACCATTTCCTGATGGATGAGCAGGTGGTGGGGACGCCCCTGCTGGTGAAATCTGGT
GTGGAGTATACACGGCTTGCAGTGGAGACAGCCCAGGGCCTTGATGGGCGCAGCCATCTTGTCA
TGTACCTGGGAACCACCACAGGGTCGCTCCACAAGGCTGTGGTGAGTGGGGACAGCGGTGCTCA
TCTGGTGGAAGAGATTCAGCTGTTCCCGGACCCCGAACCTGTTCGTAACCTGCAGCTGGCCCCC
ACCCAGGGTGCAGTGTTTGTAGGCTTCTCAGGAGGTGTCTGGAGGGTGCCCCGAGCCAACTGTA
GCGTCTATGAGAGCTGTGTGGACTGTGTCCTTGCCCGGGATCCCCACTGTGCCTGGGACCCTGA
GTCCCGAACCTGTTGCTTCCTGTCTGCCCCCACCCTGAACTCCTGGAAGCAGGACATGGAGCGG
GGGAACCCAGAGTGGGCATGTGCCAGTGGCCCCATGAGCAGGAGCCTTCGGCCTCAGAGCCGCC
CGCAAATCATTAAAGAAGTTCTGGCTGTCCCCAACTCCTTCCTGGAGCTCCCGTGCCCCCACCT
GTCAGCGTTGGCCTCTTACTACTGGAGTCATGGCCCAGCAGCAGTCCCAGAAGCCTCTTCCACT
GTCTACAATGGCTCCCTCTTGCTGATAGTGCAGGATGGAGTTGGAGGTCTCTACCAGTGCTGGG
CAACTGAGAATGGCTTTTCATACCCTGTGGTCTCCTACTGGGTGGACAGCCAGGACCAGCCCCT
GGCCCTGGATCCTGAACTGGCAGGCATCCCCCGGGAGCACGTGGAGGTCCCGTTGACCAGGGTC
AGTGGTGGGACCGCCCTGGCTGCCCAGCGGTCCTACTGGCCCCACTTTGTCACTGTCACTGTCC
TCCTCGCCTTAGTGCTTTCAGGAGCCCTCATCATCCTCCTGGCCTCCCCACTGGGAGCACTCCG
GGCTCGGGGCAAGGTTCAGGGCTGCGAGACCCTGCCCCCTGGGGAGAAGGCCCCATTGAGCAGA
GAGCAACACCTCCAGTCCCCCAAGGAATGCAGGACCTCTGCCAGCGATGTGGACGCTGACAACT
GCCTAGGCACTGAGGTGGCTTAAACTCTAGGCACAGGCTGGGGCTGCAGGGCAGGCACCTGGCC
ATGCTGGCTGGGTGGCCCCAGCACAGCCTTGACTAGGATGAGAGCAGCACAAAAGACCACCTTT
CTCCCCTGAGAGGAGCTTCTGCTACTCTGCATCACCGATGGCACTCAGCAGGGTGGTGCGAAGC
AGTCTGCCTCCCCTATGGGACTCCCTTCTACCAAGCACACGAGCTCTCTAACAGGGTGGGGGCT
ACCCCCGGACCTGCTCCTGCGCTGATATTGAAGAACCTGGAGAGGATCCTTCAGTTCTGGCCAT
TCCAGGGACCCTCCAGAAACACAGTGTTCCAAGAGACCCTAAAAAACCTGCCTGTCCCAGGACA
CTATGGTAATGAACACCAAACATCTAAACAACCATATGCTAACATGCCAGTCGTGGAAACTCCA
CTCTGAAGTTGCCACTTTGAACACCAACACTCCCCTCTCCCAGGGTTGTGCAGGGATCTGCTCC
CTCCTGCTTCCCTTACCAGACATGCACCACTGACTCCCAGGAAGTCTTTCCTGAAGTCTGACCA
CCTTCCTTCTTGCTTCAGTTGGGGCAGACTGTGATCCCTTCTGCCCTGGGAGAATGGTAGGGGT
AATCTGAGCCTTGTTCACTCCTTTACCCTAGCTGACCCCTTGACCTCTCCCCTTCCCTTTTCTT
TTGTTTTGGGATTCAGAAAACTGCTTGTCAGAGACTGTTTATTTTTTATTAAAAAGACAAAGCT
TATGTATGA

hide sequence

RefSeq Acc Id:

XM_037997778 ⟹ XP_037853706

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,011,431 (-)	NCBI

RefSeq Acc Id:

XM_037997779 ⟹ XP_037853707

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,002,514 (-)	NCBI

RefSeq Acc Id:

XM_037997780 ⟹ XP_037853708

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	6,978,444 - 7,011,430 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007974936	(Get FASTA)	NCBI Sequence Viewer
	XP_007974937	(Get FASTA)	NCBI Sequence Viewer
	XP_007974938	(Get FASTA)	NCBI Sequence Viewer
	XP_037853706	(Get FASTA)	NCBI Sequence Viewer
	XP_037853707	(Get FASTA)	NCBI Sequence Viewer
	XP_037853708	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015932
	ENSCSAP00000015932.1

RefSeq Acc Id:	XP_007974938 ⟸ XM_007976747
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4Z3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007974936 ⟸ XM_007976745
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4Z3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007974937 ⟸ XM_007976746
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4Z3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000015932 ⟸ ENSCSAT00000000120

RefSeq Acc Id:	XP_037853706 ⟸ XM_037997778
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S4Z3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037853708 ⟸ XM_037997780
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037853707 ⟸ XM_037997779
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002102	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000120.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	ligand-binding face of the semaphorins, domain 2	UniProtKB/TrEMBL
InterPro	Plexin_repeat	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Semap_dom	UniProtKB/TrEMBL
	Semap_dom_sf	UniProtKB/TrEMBL
	Semaphorin	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	SEMA4A	ENTREZGENE
PANTHER	PTHR11036	UniProtKB/TrEMBL
	SEMAPHORIN-4A	UniProtKB/TrEMBL
Pfam	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
PROSITE	SEMA	UniProtKB/TrEMBL
SMART	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
Superfamily-SCOP	Plexin repeat	UniProtKB/TrEMBL
	SSF101912	UniProtKB/TrEMBL
UniProt	A0A0D9S4Z3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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