SPDYE4 (speedy/RINGO cell cycle regulator family member E4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SPDYE4 (speedy/RINGO cell cycle regulator family member E4) Chlorocebus sabaeus
Analyze
Symbol: SPDYE4
Name: speedy/RINGO cell cycle regulator family member E4
RGD ID: 18340705
Description: ENCODES a protein that exhibits protein kinase binding (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: speedy protein E4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,109,933 - 8,117,162 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,110,896 - 8,116,145 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,266,178 - 13,277,560 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SPDYE4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,109,933 - 8,117,162 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,110,896 - 8,116,145 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,266,178 - 13,277,560 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SPDYE4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,747,532 - 8,758,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,747,524 - 8,758,559 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,650,850 - 8,661,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,597,181 - 8,602,556 (-)NCBINCBI36Build 36hg18NCBI36
Celera178,687,309 - 8,692,763 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,555,388 - 8,560,840 (-)NCBIHuRef
CHM1_1178,665,508 - 8,670,961 (-)NCBICHM1_1
T2T-CHM13v2.0178,653,744 - 8,664,766 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2766,082,367 - 66,089,201 (+)NCBI
Spdye4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,202,070 - 143,212,657 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,202,071 - 143,212,645 (-)EnsemblGRCm39 Ensembl
GRCm385143,216,315 - 143,226,902 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,216,316 - 143,226,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,977,995 - 143,987,561 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,481,838 - 143,492,030 (-)NCBIMGSCv36mm8
Celera5140,260,816 - 140,270,325 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.01NCBI
Spdye4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,450,833 - 16,458,330 (+)NCBIGRCr8
mRatBN7.21211,337,262 - 11,344,753 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,337,299 - 11,344,740 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,145,092 - 12,152,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,768,374 - 12,775,833 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,794,456 - 11,801,915 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,390,831 - 13,398,301 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,390,859 - 13,398,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,431,782 - 15,439,132 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,708,689 - 11,716,143 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,129,508 - 13,136,688 (+)NCBICelera
Cytogenetic Map12p11NCBI
SPDYE4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21964,988,902 - 65,001,396 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11769,798,181 - 69,810,682 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01742,895,260 - 42,902,399 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11747,628,877 - 47,634,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1747,628,877 - 47,634,358 (+)Ensemblpanpan1.1panPan2
LOC607286
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,058,028 - 12,065,373 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,181,328 - 18,189,900 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,057,950 - 12,066,124 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1611,932,206 - 11,941,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,940,380 - 11,949,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,138,756 - 12,148,187 (+)NCBIUU_Cfam_GSD_1.0
LOC100520556
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.134,441,881 - 4,448,524 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23144,255,998 - 144,263,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 13 12
Below cutoff 19 6 40

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000008483   ⟹   ENSCSAP00000006630
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl168,110,896 - 8,116,145 (-)Ensembl
RefSeq Acc Id: XM_037987321   ⟹   XP_037843249
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605913,266,178 - 13,277,560 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037843249 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006630.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000006630   ⟸   ENSCSAT00000008483
RefSeq Acc Id: XP_037843249   ⟸   XM_037987321
- UniProtKB: A0A0D9RDE1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008483.1 UniProtKB/TrEMBL
InterPro Speedy UniProtKB/TrEMBL
KEGG Report csab:103242364 UniProtKB/TrEMBL
NCBI Gene SPDYE4 ENTREZGENE
PANTHER PTHR31156 UniProtKB/TrEMBL
  SPEEDY PROTEIN E4 UniProtKB/TrEMBL
Pfam Spy1 UniProtKB/TrEMBL
UniProt A0A0D9RDE1 ENTREZGENE, UniProtKB/TrEMBL