NXNL1 (nucleoredoxin like 1) - Rat Genome Database

Name: NXNL1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: NXNL1 (nucleoredoxin like 1) Chlorocebus sabaeus

Analyze

Symbol:

NXNL1

Name:

nucleoredoxin like 1

RGD ID:

18340227

Description:

INVOLVED IN photoreceptor cell maintenance (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleoredoxin-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NXNL1 (nucleoredoxin like 1)	NCBI	Ortholog
Mus musculus (house mouse):	Nxnl1 (nucleoredoxin-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nxnl1 (nucleoredoxin-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nxnl1 (nucleoredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NXNL1 (nucleoredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NXNL1 (nucleoredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NXNL1 (nucleoredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nxnl1 (nucleoredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,948,401 - 15,951,390 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	15,948,514 - 15,951,096 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	3,480,400 - 3,488,768 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

photoreceptor cell maintenance (IEA)

Cellular Component

mitochondrion (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

NXNL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,948,401 - 15,951,390 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	15,948,514 - 15,951,096 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	3,480,400 - 3,488,768 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

NXNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,455,425 - 17,460,926 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,455,425 - 17,460,926 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,566,234 - 17,571,735 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,427,234 - 17,432,725 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	17,427,235 - 17,432,725	NCBI
Celera	19	17,467,985 - 17,473,494 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,131,793 - 17,137,523 (-)	NCBI		HuRef
CHM1_1	19	17,565,780 - 17,571,275 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,590,193 - 17,595,708 (-)	NCBI		T2T-CHM13v2.0

Nxnl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	72,013,211 - 72,019,291 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	72,013,199 - 72,019,245 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,560,555 - 71,566,649 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,560,555 - 71,566,601 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,084,454 - 74,090,548 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,489,544 - 74,495,590 (-)	NCBI		MGSCv36	mm8
Celera	8	74,071,252 - 74,073,239 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

Nxnl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,303,454 - 18,311,510 (-)	NCBI		GRCr8
mRatBN7.2	16	18,270,604 - 18,279,797 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,262,688 - 18,279,987 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,322,531 - 18,327,498 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,454,475 - 19,459,400 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,375,468 - 18,380,435 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,992,211 - 19,996,815 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,992,984 - 19,996,836 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,847,552 - 19,857,599 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,766,955 - 18,767,525 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,738,023 - 18,767,517 (-)	NCBI
Celera	16	18,480,208 - 18,480,533 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Nxnl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	826,388 - 827,170 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	825,818 - 827,167 (+)	NCBI	ChiLan1.0	ChiLan1.0

NXNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	22,325,893 - 22,333,191 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	21,332,484 - 21,339,800 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,942,887 - 16,948,655 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,916,159 - 17,922,126 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,916,159 - 17,922,126 (-)	Ensembl	panpan1.1		panPan2

NXNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,348,890 - 45,351,603 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,262,931 - 45,265,416 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,836,047 - 45,838,766 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,836,047 - 45,838,766 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	45,072,450 - 45,075,163 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,482,468 - 45,484,967 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,758,504 - 45,760,982 (+)	NCBI		UU_Cfam_GSD_1.0

NXNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,244,646 - 60,251,582 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,244,592 - 60,249,696 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,863,727 - 59,869,499 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Nxnl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	551,921 - 554,427 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	549,989 - 554,902 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	hemolymphoid system
High
Medium
Low	8
Below cutoff	9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007995725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000003624 ⟹ ENSCSAP00000001900

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	6	15,948,514 - 15,951,096 (-)	Ensembl

RefSeq Acc Id:

XM_007995725 ⟹ XP_007993916

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	15,948,401 - 15,951,390 (-)	NCBI
Vero_WHO_p1.0	NW_023666074	3,480,400 - 3,488,768 (+)	NCBI

Sequence:

show sequence

CCTGACTTCAGATGATCCTCCCACCTCTGCCTCTCAAAGTGCTGGGATCACAGGTATGAGCCAG
CGCACCCGTCTGTTACGTGTTTTCTTAATGCGTTCGTTTGCAGCTCTCTCCTGAGAAGGGCCAC
ACAGAGAGCCCTGCCCCCTGCCCTTAGAGGCCCCTCAGGTCAAGGTTTAGGCAGATTAGTGAAG
TCCTAAGCTGGCTTCCTGAAGATTTCTATTTCTGGGAGAGGAGCCAGTCTGCAGACCGGGGACC
ACACGCCGCGCCGTTCCCAGCACCCAGCCCAGGATACCATGGCCTCCCTGTTTTCTGGCCGCAT
CCTGATCTGCAACAACAATGACCAGGACGAGCTGGACACGGAGGCCGAGGTCATCCGCAGGTTG
GAGAACCGGTTGGTGCTGCTGTTCTTTGGCGCCGGGGCTTGTCCGCAGTGCCAGGCCTTCGTGC
CCATCCTCAAGGACTTCTTCGTGCGGCTTACAGATGAGTTCTATGTGCTGCGGGCAGCGCAACT
GGCCCTGGTGTACGTGTCCCAGGACTCCACGGAGGAGCAGCAAGACCTGTTCCTCAAGGACATG
CCAAAGAAGTGGCTTTTCCTGCCCTTTGAGGATGAACTGAGGAGGGACCTCGGGCGCCAGTTCT
CCGTGGAGCGCCTGCCGGCGGTTGTGGTGCTCAAGCCGGACGGGGACGTGCTCACTCGCGACGG
CGCCGACGAGATCCAGCGCCTGGGCACTGCCTGCTTTGCCAACTGGCAGGAGGCAGCCGAGGTG
CTGGACCGCAACTTCCAGCTGCCAGAGGACCTGGAGGACCAGGAGCCACGGAGCCTTACCGAGT
GCCTGCGCCGCCGCAAGTACCGCGTGGAAAAGGCGGCGCGAGGCGGTCGCGACCCCGGGGGAGG
GGGTGGGGAGGAGGGCGGGGCCGGGGGACTGTTCTGACCCCCTAGGGTGGAGGAGAGGTGTGGG
GTTTGGTGATGAACCTCCACCCCCACCCCACCCCCGCACGCCTGTAATCCCAGCACTTGGGGAG
GCCGAGGCGGGAGGATCGCTTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_007993916	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001900.1

RefSeq Acc Id:	XP_007993916 ⟸ XM_007995725
- UniProtKB:	A0A0D9QZW1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000001900 ⟸ ENSCSAT00000003624

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005592	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003624.1	UniProtKB/TrEMBL
Gene3D-CATH	Glutaredoxin	UniProtKB/TrEMBL
InterPro	RdCVF	UniProtKB/TrEMBL
	Thioredoxin-like_fold	UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/TrEMBL
	Thioredoxin_domain	UniProtKB/TrEMBL
KEGG Report	csab:103234143	UniProtKB/TrEMBL
NCBI Gene	NXNL1	ENTREZGENE
PANTHER	NUCLEOREDOXIN-LIKE PROTEIN 1	UniProtKB/TrEMBL
	PTHR47109	UniProtKB/TrEMBL
Pfam	Thioredoxin_8	UniProtKB/TrEMBL
PROSITE	THIOREDOXIN_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52833	UniProtKB/TrEMBL
UniProt	A0A0D9QZW1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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