AL162458.1 (novel transcript) - Rat Genome Database

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Gene: AL162458.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL162458.1
Name: novel transcript
RGD ID: 16570977
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2045,926,518 - 45,935,055 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:231
Interacting mature miRNAs:237
Transcripts:ENST00000366171
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 14 14 14 256 14 2 30 17 31 1
Below cutoff 5 7 7 117 7 2 1 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000647856
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2045,926,518 - 45,935,055 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL162458.1 COSMIC
Ensembl Genes ENSG00000285796 Ensembl
GTEx ENSG00000285796 GTEx
Human Proteome Map AL162458.1 Human Proteome Map